Table 2.
The Top Four Protein Folds Comparable to that of HAstV-1 Coat Protein Residues 1-415 by 3D-PSSM Threading
Templatea | Template length (no. of residues) | Sequence Identity (%) | Confidenceb(%) |
---|---|---|---|
TMEV | 267 | 13 | >93 |
BPMV | 185 | 18 | >76 |
CMtV | 267 | 20 | >72 |
TBSV | 286 | 13 | >57 |
TMEV, Theiler’s murine encephalomyelitis virus DA strain; BPMV, bean pod mottle virus; CMtV, carnation mottle virus; TBSV, tomato bushy stunt virus.
Confidence is defined as 100 X probability of a match being correct (26)