Table 3.
The Top Protein Folds Comparable to that of the Astrovirus Coat Protein Residues 1-415 by 3D-PSSM Threading
| Astrovirus | Templatea | Template length (no. of residues) | Sequence identity (%) | Confidence |
|---|---|---|---|---|
| HAstV-1 | TMEV | 267 | 13 | >93 |
| HAstV-2 | TMEV | 267 | 12 | >96 |
| HAstV-3 | TMEV | 267 | 14 | >93 |
| HAstV-4 | BPMV | 185 | 19 | >64 |
| HAstV-5 | BPMV | 185 | 17 | >69 |
| HAstV-6 | TMEV | 267 | 15 | >91 |
| HAstV-7 | BPMV | 185 | 18 | >82 |
| HAstV-8 | TMEV | 267 | 13 | >89 |
| FAstV-1 | BPMV | 185 | 18 | >80 |
| PAstV-1 | CMtV | 267 | 19 | >83 |
| OAstV-1 | CMtV | 267 | 18 | >94 |
| MiAstV | TBSV | 321 | 16 | >90 |
| TAstV-1 | CMtV | 267 | 16 | >90 |
| TAstV-2 | CMtV | 267 | 17 | >84 |
| ANV | TBSV | 321 | 14 | >78 |
a
Multiple templates that had a significant comparability (>50%) were found for each astrovirus sequence; for clarity, only the top protein template is illustrated.