TABLE 6.
Sequence identity of a 348-nt region of ORF2 among serotype 4 (deduced from genotype) central Australian astrovirus strains and prototype serotype 4 astrovirus
Strain | % Sequence identity in (yr of isolation)a:
|
|||||||
---|---|---|---|---|---|---|---|---|
Prototype | 1982 (CAV4A) | 1985 (CAV4B) | 1994 (CAV4C) | 1995
|
1997 (CAV4F) | 1998 (CAV4G) | ||
CAV4D | CAV4E | |||||||
Prototype | 96.3 | 94.3 | 96.6 | 96.0 | 96.0 | 90.8 | 93.7 | |
CAV4A | 99.1 | 94.3 | 98.9 | 98.6 | 98.6 | 91.7 | 93.4 | |
CAV4B | 99.1 | 100 | 94.5 | 94.3 | 94.3 | 90.8 | 97.4 | |
CAV4C | 99.1 | 100 | 100 | 99.1 | 99.1 | 91.4 | 93.7 | |
CAV4D | 99.1 | 100 | 100 | 100 | 99.4 | 91.1 | 92.8 | |
CAV4E | 99.1 | 100 | 100 | 100 | 100 | 91.7 | 92.8 | |
CAV4F | 99.1 | 100 | 100 | 100 | 100 | 100 | 90.2 | |
CAV4G | 99.1 | 100 | 100 | 100 | 100 | 100 | 100 |
Numbers at the top right indicate results of a pairwise comparison of the 348-nt regions, and numbers at the bottom left indicate results of pairwise comparison of the deduced amino acid sequences of the regions.