Figure 2.

Typical view of a TOPAAS link analysis output. A, For potato BAC RH123P09 a predicted contig order, gap-flanking read pairs (rp:), gap-spanning MUMs (m:), and contig bridging BLAST alignment (b:) between pairs of contigs are shown and provide a link to more detailed output for BLAST linkage (B), EST alignments (C), and read pairs (D), described in terms of position, length, direction, percentage identity, and E-score. The number of links per link type is indicated behind the colon separator.