Table I.
The Lhc supergene family in poplar
Number of Lhc ESTs in EST libraries of poplar (for details, see Supplemental Table I) assigned to the 39 gene models (www.populus.db.umu.se) for the 20 identified Lhc protein classes. The numbers of amino acids refers to the complete coding region encoding the precursor protein.
| Protein | Gene | ESTs | Gene Model | Amino Acids |
|---|---|---|---|---|
| Lhca1 | Lhca1.1 | 31 | estExt_Genewise1_v1.C_LG_X2607 | 243 |
| Lhca1.2 | 2 | estExt_fgenesh4_pg.C_LG_VIII0315 | 244 | |
| Lhca2 | Lhca2.1 | 11 | eugene3.00010471 | 272 |
| Lhca2.2 | 4 | estExt_fgenesh4_pg.C_LG_III1424 | 269 | |
| Lhca3 | Lhca3 | 108 | grail3.0012036701 | 274 |
| Lhca4 | Lhca4 | 24 | grail3.0129002701 | 251 |
| Lhca5 | Lhca5.1 | 1 | estExt_fgenesh4_pg.C_400276 | 267 |
| Lhca5.2 | n.d.ab | eugene3.00021173 | 56 | |
| Lhca6 | Lhca6 | 7 | eugene3.00280046 | 261 |
| Lhcb1 | Lhcb1.1 | 431 | grail3.0002067901 | 264 |
| Lhcb1.2 | 61 | estExt_Genewise1_v1.C_LG_V1774 | 264 | |
| Lhcb1.3 | 37 | eugene3.00110470 | 264 | |
| Lhcb1.4 | 11 | estExt_Genewise1_v1.C_LG_II0002 | 266 | |
| Lhcb2 | Lhcb2.1 | 192 | estExt_fgenesh4_pm.C_LG_II0962 | 265 |
| Lhcb2.2 | 14 | grail3.0012031401 | 265 | |
| Lhcb3 | Lhcb3.1 | 23 | estExt_Genewise1_v1.C_1340185 | 263 |
| Lhcb3.2 | 22 | estExt_fgenesh4_kg.C_LG_XI0033 | 263 | |
| Lhcb4 | Lhcb4.1 | 68 | grail3.0025015101 | 285 |
| Lhcb4.2 | 47 | grail3.0023029001 | 283 | |
| Lhcb4.3 | 13 | estExt_fgenesh4_pm.C_LG_VIII0258 | 275 | |
| Lhcb5 | Lhcb5 | 85 | estExt_Genewise1_v1.C_1250189 | 290 |
| Lhcb6 | Lhcb6.1 | 39 | estExt_Genewise1_v1.C_LG_I9864 | 257 |
| Lhcb6.2 | 39 | estExt_fgenesh4_kg.C_LG_III0002 | 257 | |
| Lhcb7 | Lhcb7 | 3 | estExt_Genewise1_v1.C_LG_V2296 | 338 |
| PsbS | PsbS | 32 | estExt_fgenesh4_pg.C_LG_II0752 | 272 |
| ELIP | Lil1.1 | 351 | estExt_Genewise1_v1.C_LG_VIII0523 | 182 |
| Lil1.2 | 57 | eugene3.00081476 | 182 | |
| Lil1.3 | 26 | estExt_fgenesh4_pg.C_LG_VIII1396 | 182 | |
| OHP1 | Lil2 | 6 | grail3.0023020401 | 119 |
| LIL3 | Lil3.1 | 8 | estExt_Genewise1_v1.C_290436 | 249 |
| Lil3.2 | 4 | eugene3.01180096 | 258 | |
| Lil3.3 | 1 | eugene3.00150905 | 257 | |
| Lil3.4 | n.d. | fgenesh1_pg.C_scaffold_9489000001 | – | |
| SEP1 | Lil4.1 | 11 | estExt_fgenesh4_pg.C_LG_I2581 | 145 |
| Lil4.2 | 3 | estExt_fgenesh4_pg.C_LG_IX0658 | 145 | |
| SEP2 | Lil5.1 | n.d. | estExt_fgenesh4_pg.C_LG_V0240 | 202 |
| Lil5.2 | n.d. | eugene3.00070639 | 202 | |
| OHP2 | Lil6.1 | 15 | estExt_fgenesh4_pg.C_LG_II0599 | 188 |
| Lil6.2 | 2 | estExt_fgenesh4_pg.C_LG_V1127 | 188 |
a
n.d., No EST detected but predicted gene-model from genome sequence available.
b
Pseudogene.