Table 2.
Distances between the experimentally determined transcriptional start-sites and the ATG for each gene
| Gene | Distance between +1 to ATG (bp) | Gene product | References |
|---|---|---|---|
| ctRNA | NA | Antisense RNA regulator | (30) |
| repA | 45 | Plasmid partitioning protein RepAd | (31) |
| thiC | 209 | Thiamine biosynthesis | (32) |
| recA | 37 | Recombinase A | (33) |
| lipA | 63 | Lipoic acid synthetase | (34) |
| nifR | 71 | Nitrogen regulation | (35) |
| nifR | 28 | Nitrogen regulation | (35) |
| sigA | 230 | RNA polymerase sigma factor protein (sigma-70) | This work |
| ypf00079 | 18 | Probable methyl-accepting chemotaxis protein | This work |
| glyQ | 27 | Glycyl-tRNA synthetase alpha subunit | This work |
| yhch00468 | 37 | Hypothetical conserved protein | This work |
| yhch00334 | 54 | Hypothetical conserved protein | This work |
| yhch01154 | 229 | Hypothetical conserved protein | This work |
| Eda | 35 | KHG-KDPG aldolase | This work |
| yhch00528 | 19 | Hypothetical conserved protein | This work |
| engB | 29 | GTP-binding protein | This work |
| 16S rRNA | NA | 16S ribosomal RNA | This work |
| yhch01141 | 67 | Hypothetical conserved protein | This work |
| yhch00226 | 23 | Hypothetical conserved protein | This work |
| yhch00739* | A | Hypothetical conserved protein | This work |
| hemC | 18 | Porphobilinogen deaminase | This work |
| clpP | 55 | ATP-dependent Clp protease proteolytic subunit 2 | This work |
| rpoH1 | 101 | RNA polymerase sigma factor protein (sigma-32) | This work |
| aroG | 164 | Phospho-2-dehydro-3- deoxyheptonate aldolase | This work |
| ypch00196 | 41 | Putative transcriptional regulator | This work |
| ureA | 34 | Urease (urea amidohydrolase) gamma subunit | This work |
| ypch00131 | 268 | Probable transcriptional regulator | This work |
| ndvB | 24 | Beta-1,2-glucan production associated transmembrane protein | This work |
| ype00047* | 29 | Putative tail-specific protease | This work |
| yhch00197 | 21 | Hypothetical conserved protein | This work |
| pfs | 272 | mta/sah nucleosidase (P46) bifunctional protein | This work |
| cycH | A | cytochrome c-type biogenesis protein | This work |
| ypch00552 | A | Probable cytochrome P450 hydroxylase | This work |
| yhch00096 | 7 | Hypothetical conserved protein | This work |
| ypch00132 | 155 | Putative glutamine amidotransferase | This work |
| pepN | 23 | Aminopeptidase N | This work |
| pepN | 14 | Aminopeptidase N | This work |
| yhch00326 | 65 | Hypothetical conserved protein | This work |
| rpsP | 92 | 30S ribosomal protein S16 | This work |
| yhch01115 | 123 | Hypothetical conserved | This work |
| yhch00280 | 375 | Hypothetical conserved | This work |
| ispB | A | Octaprenyl-diphosphate synthase | This work |
| yhch00076 | 381 | Hypothetical conserved protein | This work |
| exoR2 | 242 | Exopolysaccharide production negative regulator | This work |
*pseudogene; A, adenine from ATG; NA, non apply.