Table 2.
Potential regulatory promoter motifs
| Cluster | Motif | Related motif | Frequency in cluster | Total number in genome (frequency) | Ratio | Binomial probability | Significance threshold |
|---|---|---|---|---|---|---|---|
| Induced CESR genes | TKACGT | ATF/CRE | 67/140 (47.9%) | 882 (17.8%) | 2.7 | 4.4e-16 | 1e-08 |
| Sty1p-dependent (unstressed cells) | TKAYGTCAT | ATF/CRE | 10/44 (22.7%) | 31 (0.6%) | 37.8 | 1.8e-13 | 1e-08 |
| Sty1p-, not Atf1p-dependent | TCTTNCTT | Novel | 13/20 (65%) | 658 (13.3%) | 4.9 | 1.1e-07 | 1e-06 |
| Sty1p-repressed | TTGTCTNT | Novel | 16/40 (40%) | 426 (8.5%) | 4.7 | 1.0e-07 | 1e-06 |
| Sty1p-, but not | TTTNTTTTTTAT | Novel | 9/32 (28.1%) | 116 (2.3%) | 12.1 | 3.4e-08 | 1e-06 |
| Atf1p-repressed | TNGTTAAACT | Novel | 6/32 (18.8%) | 31 (0.6%) | 30.2 | 4.5e-08 | 1e-06 |
For details on data and gene lists, see MATERIALS AND METHODS. N in the patterns means either A, C, G, or T; K means G or T; and Y means C or T.