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. 2006 Jan 13;90(7):2356–2367. doi: 10.1529/biophysj.105.075291

TABLE 1.

List of the simulations performed. Simulations sim0 through sim5 are described in the text; simulations sim6 through sim11 are described in Supplementary Material

Label Length (ns) Description
Sim0 5.0 Equilibration of system
Sim1 1.4 SMD simulation with deca-alanine
Sim1a 7.4 SMD simulation with deca-alanine
Sim2 1.9 SMD simulation with alanine/leucine helix
Sim3 3.6 Relaxation continuing from sim1
Sim4 3.1 Relaxation continuing from sim2
Sim5 5.0 Equilibration of back-to-back dimer