Table 1.
NSMC and NSCS test results for TP53 somatic mutation spectra (H0: mutational bias; H1: selectional bias)
Sites | Mutations | Hotspots | P(H1)/χ2 | |
Bladder | ||||
Synonymous | 61 | 80 | 12 | |
Non-synonymous | 240 | 775 | 110 | 0.107/13.8 |
Nonsense | 36 | 85 | 26 | 0.038 |
Brain | ||||
Synonymous | 20 | 23 | 2 | |
Non-synonymous | 199 | 812 | 98 | 0.998/11.2 |
Nonsense | 14 | 32 | 5 | 0.015 |
Breast | ||||
Synonymous | 77 | 108 | 19 | |
Non-synonymous | 294 | 1423 | 171 | 0.111/27.3 |
Nonsense | 49 | 73 | 27 | 0.052 |
Liver | ||||
Synonymous | 34 | 43 | 5 | |
Non-synonymous | 199 | 727 | 99 | 0.980/14.4 |
Nonsense | 29 | 50 | 16 | 0.040 |
Lung | ||||
Synonymous | 56 | 88 | 17 | |
Non-synonymous | 314 | 1599 | 191 | 0.959/17.9 |
Nonsense | 55 | 170 | 31 | 0.042 |
Pancreas | ||||
Synonymous | 10 | 12 | 1 | |
Non-synonymous | 106 | 215 | 30 | 0.049/1.56 |
Nonsense | 10 | 17 | 6 | 0.058 |
Ovary | ||||
Synonymous | 20 | 21 | 1 | |
Non-synonymous | 192 | 770 | 99 | 0.995/15.7 |
Nonsense | 30 | 71 | 12 | 0.012 |
Prostate | ||||
Synonymous | 28 | 38 | 7 | |
Non-synonymous | 114 | 195 | 38 | 0.926/0.72 |
Nonsense | 9 | 12 | 2 | 0.008 |
Colon | ||||
Synonymous | 23 | 28 | 4 | |
Non-synonymous | 173 | 592 | 69 | 1.000/4.4 |
Nonsense | 19 | 60 | 5 | 0.016 |
Colorectal | ||||
Synonymous | 25 | 28 | 4 | |
Non-synonymous | 203 | 1097 | 121 | 0.000/20.3 |
Nonsense | 29 | 103 | 12 | 0.953 |
Esophagus | ||||
Synonymous | 25 | 32 | 7 | |
Non-synonymous | 215 | 1064 | 117 | 0.025/6.26 |
Nonsense | 50 | 150 | 27 | 0.032 |
Hematopoietic | ||||
Synonymous | 26 | 29 | 3 | |
Non-synonymous | 202 | 723 | 99 | 0.037/13.08 |
Nonsense | 20 | 37 | 5 | 0.018 |
Larynx | ||||
Synonymous | 8 | 10 | 2 | |
Non-synonymous | 108 | 234 | 42 | 1.000/0.60 |
Nonsense | 18 | 24 | 5 | 0.007 |
Mouth | ||||
Synonymous | 28 | 41 | 9 | |
Non-synonymous | 176 | 413 | 79 | 0.988/1.59 |
Nonsense | 33 | 53 | 10 | 0.901 |
Skin | ||||
Synonymous | 64 | 136 | 12 | |
Non-synonymous | 248 | 563 | 99 | 0.931/9.94 |
Nonsense | 25 | 69 | 12 | 0.025 |
Stomach | ||||
Synonymous | 44 | 64 | 15 | |
Non-synonymous | 195 | 617 | 88 | 0.115/1.78 |
Nonsense | 21 | 52 | 8 | 0.029 |
In the last column, the P-value for the NSMC test (numerator) and the χ2 value for the NSCS test (denominator) are shown along with the NSMC test P-value for the hotspots in nonsense sites. The statistically significant values (rejection of H0) are shown in bold type.