Table 1.
Gene | Primer | ||||
---|---|---|---|---|---|
F/R | Sequence with Fluorescent Dye* | Tm (ºC) | Product size | ||
CGB | } | F | 5′-GACCCCACCATAGGCAGAG-3′ | 61 | 541bp |
CGB5 | |||||
CGB7 | R | 5′-GGTAGTTGCACACCACCTGA-3′ FAM | 59.4 | ||
CGB8 | |||||
CGB1 | } | F | 5′-GGAGGGAGGAAGGGGAACT-3′ | 61 | 207bp |
CGB2 | |||||
CGB1 | RG | 5′-GCAACAGCAGCAGCCTCTTT-3′ FAM | 59.4 | ||
CGB2 | RG | 5′-CAACAGCAGCAGCCCCTTT-3′ FAM | 58.8 | 206bp | |
GAPDH | FML | 5′-CCATGGAGAAGGCTGGGG-3′ | 60.5 | 196bp | |
RML | 5′-CCAAGTTGTCATGGATGACC-3′ HEX | 57.3 | |||
RPII | F | 5′-CTTCACGGTGCTGGGCATT-3′ | 58.8 | 239bp | |
RR | 5′-GTGCGGCTGCTTCCATAA-3′ TET | 56 | |||
LHB** | FG | 5′-GCTACTGCCCCACCATGATG-3′ | 61.4 | 94bp | |
R1G | 5′-ATGGACTCGAAGCGCACATC-3′ FAM | 59.4 | |||
R2 | 5′-AGAGCCACAGGGAAGGAGAC-3′ FAM | 61.3 | 151bp | ||
R3 | 5′-AGCTGAGAGCCACAGGGAAG-3′ FAM | 61.4 | 156bp |
Tm, melting temperature; F, forward primer; R, reverse primer; a primer originally published by
Radonic et al.
6-FAM, TET and HEX emit fluorescent signals at 532nm, 543nm, 557nm of wavelengths, respectively.
For LHB, one forward primer was combined with different reverse primers.