TABLE 1.
Primers used in this study for RT-PCR and site-directed mutagenesis
| Primer | Sequence (5′ → 3′)a | Location in the genomeb | Polarity | Purpose |
|---|---|---|---|---|
| E272 | ATGAAGATCTACGGCTGC | 10701-10718 | + | ORF5 PCR primer |
| E280 | GCGTAGCATAGGGTAGTACTG | 11525-11545 | − | ORF5 PCR primer |
| E301 | CCGTCAGCATGCTCAAGGTGAAG | 11234-11257 | − | Cys-34 → Ser mutation in GP5 |
| E302 | CAACAGGTTTTGCTAGCGGAAGAATTGTACAAAG | 11303-11336 | − | Cys-57 → Ser mutation in GP5 |
| E303 | CAATACCAACTAGTTTTACTGG | 11321-11342 | − | Cys-63 → Ser mutation in GP5 |
| E304 | CGTCCAGGAAAGTACTATACCAACAG | 11331-11356 | − | Cys-66 → Ser mutation in GP5 |
| E305 | CACGTTTGGTACCGATTCTGATGACACC | 11367-11394 | + | Cys-80 → Ser mutation in GP5 |
| E263 | CATGCCCCCTTTTATTTACT | 11460-11479 | + | ORF6 PCR primer |
| E163 | CCACCAGTTGGCGATGGTTG | 12185-12204 | − | ORF6 PCR primer |
| E306 | GATTCATTTTCCGGAGACGGGATTTTAG | 11913-11940 | + | Cys-8 → Ser mutation in M |
| E336 | GGCGGAACACTGGTACAAAGC | 11302-11322 | − | Asn-56 → Gln mutation in GP5 |
| E363a | GGTTTTACTGGCGCTGCAGCCGTACAAAGCAGT | 11299-11332 | − | Asn-56 → Gly mutation in GP5 |
| E363a | GGTTTTACTGGCGCTGCAGCTGTACAAAGCAGT | 11299-11332 | − | Asn-56 → Ser mutation in GP5 |
| E364 | GGTTTTACTGGCGCCGCAATTGTACAAAGC | 11302-11332 | − | Ser-58 → Gly mutation in GP5 |
| E123 | GCCCATGGCCAAGTAGGCCCCG | 11625-11646 | − | RT primer |
Mutated nucleotides are depicted in bold, and (translationally silent) restriction sites engineered to select and identify mutants are underlined.
Genome positions are based on the sequence of EAV full-length cDNA clone pEAV030 (EMBL database accession number Y07862).