TABLE 1.
Pairwise alignment of representative sequences of avian and mammalian IFN with zfIFN
IFN | % Identity/similaritya with:
|
|||||
---|---|---|---|---|---|---|
Human IFN-α | Human IFN-β | Mouse IFN-α | Chicken IFN-α | Chicken IFN-β | zfIFN | |
Human IFN-α | 38/54 | 59/75 | 24/49 | 22/44 | 25/53 | |
Human IFN-β | 32/52 | 28/49 | 28/51 | 24/47 | 24/44 | |
Mouse IFN-α | 59/75 | 25/44 | 20/38 | 20/41 | 32/55 | |
Chicken IFN-α | 20/40 | 21/40 | 19/37 | 55/67 | 22/43 | |
Chicken IFN-β | 17/41 | 19/38 | 16/36 | 47/61 | 21/41 | |
zfIFN | 15/34 | 14/36 | 16/34 | 18/38 | 16/39 |
Numbers below the diagonal represent percentages of identity or similarity over the entire sequence, and numbers above the diagonal represent alignments in which the N-terminal 70 amino acids were removed from each sequence. The region from amino acids 70 to 170 of each group 1 IFN sequence represents a conserved domain.