Table 1.

Summary of mitochondria neighborhood analysis

Gene	Set 1			Set 2			Set 3			Set 4
	N100, 2.4*	N250, 6.1	N500, 12.2	N100, 2	N250, 5	N500, 10	N100, 2.8	N250, 7	N500, 14.1	N100, 3.4	N250, 8.6	N500, 17.2
DKFZP564A033	0	1	1	0	2	3	1	5	7
	1	1	4				2	4	7
							2	4	6
ABCG8				0	0	3
LRPPRC	5	20†	34†	4	8	14	8	13	17	52†	74†	76†
PPM1B	0	0	2	0	1	1	1	3	6	6	10	11
	0	1	3	2	4	5				8	11	15
										5	9	12
SLC3A1	8†	10	15				1	5	9	7	23†	27
	3	3	6
KIAA0436	1	6	14				2	4	8
SIX3							2	4	6	0	4	4
										1	2	5
SIX2										2	3	8

Mitochondria neighborhood index, N_R, is shown for each query gene (shown in first column) across four different expression sets using three different values of R (R = 100, 250, and 500). E(N_R) is the expected index assuming a binomial distribution of mitochondrial genes across the entire expression set. Boldface items denote the largest entry in a column. Note that some genes are represented more than once in an expression set, and the N_R value for each instance is shown on a separate row. See Methods for a description of expression sets. 

^*N_R, E(N_R). 

^† An index significantly greater than E(N_R) (P < 0.001).