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. 2003 Feb;15(2):561–576. doi: 10.1105/tpc.007609

Table 2.

Expression Profiles of Tunicamycin-Upregulated Genes and the Corresponding Results in the DTT Experiment

Tunicamycin FVb
DTT
0 2+ 2 5+ 5 0
2+
2
5+
5
BAC Affymetrix Code Description Taga FV Fc FV F FV F FV F FV F
Protein folding
chaperones
T12M4.8 13067_s_at Calreticulin2 OL-LS 1.0 4.3 0.9 8.8 1.0 1.0 P 2.1 P 1.0 P 2.3 P 0.7 P
F7J7.120 15026_at Similar to heat shock dnaJ homolog OL-HS 0.9 1.8 0.8 3.7 1.0 1.0 P 2.2 P 0.8 P 2.8 P 0.8 P
D89341/2 15172_s_at Luminal binding protein, BiP OL-HS 0.9 3.7 0.8 4.5 1.0 1.0 P 4.3 P 1.0 P 4.6 P 0.8 P
T19F6.1 16448_g_at (D2T2)d HSP90 isolog OL-HS 0.8 3.6 0.7 7.6 1.0 1.0 P 2.3 P 0.9 P 2.9 P 0.9 P
MAC9.11 17473_at Calnexin, CNX1 OL-HS 1.0 2.6 1.0 5.9 0.9 1.0 P 5.2 P 0.9 P 4.3 P 1.0 P
T2I1.50 17924_at Calnexin homolog OL-HS 1.0 3.7 0.9 6.7 1.0 1.0 P 4.0 P 0.9 P 3.1 P 1.0 P
Disulfide bond formation
F28P10.60 14036_at PDI-like protein NOL 1.0 1.1 0.9 3.1 0.8 1.1 P 1.0 P 1.0 P 1.6 P 0.8 P
F8K7.19 15976_at Similar to PDI NOL 0.8 2.1 0.9 4.5 1.0 1.0 P 1.4 P 0.9 P 1.6 P 0.8 P
T30B22.23 17398_at Putative PDI OL-HS 1.0 1.7 0.6 5.0 0.8 1.0 P 1.8 P 0.9 P 3.3 P 1.0 P
T21L14.14 19457_at Putative PDI OL-HS 0.9 3.2 1.0 6.8 0.6 1.0 P 3.9 P 0.8 P 5.6 P 1.0 P
Translocon/protein degradation
T18E12.21 12042_at Signal peptide peptidase-like OL-LS 1.0 1.9 0.9 5.4 0.9 1.0 P 1.6 P 1.0 P 2.2 P 0.9 P
F13P17.9 13102_at Putative protein transport protein SEC61 α-subunit NOL 0.9 2.6 0.8 3.3 1.0 0.9 P 1.3 P 1.0 P 1.7 P 0.9 P
T14P1.12 16950_s_at (D2T2)d sec61 β-subunit homolog OL-HS 1.0 4.3 0.9 2.7 0.7 1.0 P 2.4 P 0.8 P 2.6 P 1.0 P
F13M23.60 17882_at Protein transport protein sec61 γ-subunit-like OL-HS 1.0 3.5 0.9 3.6 0.9 1.0 P 3.6 P 1.0 P 4.2 P 1.0 P
F8D23.3 20475_at Putative AAA-type ATPase OL-LS 1.0 1.0 0.9 3.3 1.2 0.6 A 1.8 P 0.6 P 4.3 P 1.0 P
Glycosylation/modification
T3D7.1 13134_s_at Putative galactinol synthase OL-LS 1.0 0.7 0.9 2.5 1.0 1.0 P 1.6 P 1.0 P 4.4 P 0.8 A
F4I18.23 14061_at Putative phosphomannomutase NOL 1.0 1.0 1.0 2.8 0.6 0.9 P 1.6 P 1.0 P 1.7 P 1.0 P
T20F6.5 14381_at UDP-galactose transporter, AtUtr1 OL-HS 1.0 5.0 0.6 8.7 0.7 0.9 P 6.6 P 1.0 P 6.8 P 1.0 P
T12J13.8 17109_s_at β-Glucosidase NOL 1.0 0.9 1.1 11.9 0.9 1.2 P 0.9 P 1.0 P 1.0 P 1.0 P
T32G6.1 18675_at (D1T2)d GPT OL-HS 1.0 3.2 0.4 6.1 0.9 0.8 P 1.5 P 1.0 P 3.1 P 0.9 P
Vacuolar
F4F15.300 13123_at Simxilar to St12p protein OL-HS 0.8 1.0 1.0 2.6 0.6 1.0 P 2.0 P 1.0 P 2.6 P 0.9 P
F9K20.2 20229_at Similar to vacuolar H+-pyrophosphatase OL-LS 1.0 1.5 0.9 2.7 0.9 0.8 P 1.1 P 1.0 P 2.1 P 0.8 P
Vesicle/trafficking
F12F1.27 19212_at Similar to vesicle trafficking protein OL-HS 0.9 1.9 1.0 3.7 0.7 1.0 P 1.8 P 0.8 P 3.2 P 0.8 P
F8K4.21 19648_at Similar to coatomer α-subunit (HEPCOP) homolog OL-HS 1.0 1.9 1.0 2.8 0.9 1.0 P 2.9 P 1.0 P 3.5 P 1.0 P
F7A19.10 20069_at Putative Golgi-associated membrane trafficking protein NOL 0.9 0.8 1.0 3.3 1.0 0.9 P 0.9 P 1.0 P 1.4 P 1.0 P
F13D4.70 14078_at Similar to mouse stromal cell-derived factor 2 OL-HS 1.0 2.6 1.0 3.9 1.0 0.9 P 2.6 P 0.8 P 3.3 P 1.0 P
Kinases
F9L1.42 15438_at Ser/Thr kinase receptor-associated protein NOL 1.0 2.6 0.8 1.4 1.0 2.1 P 0.9 P 1.4 P 0.4 P 1.0 P
F22O13.13 19692_at Putative calcium-dependent protein kinase OL-HS 1.0 0.6 2.0 3.3 0.9 0.4 P 1.0 P 0.6 P 2.5 P 1.4 P
Jasmonate related
F9D16.70 14832_at Tyrosine transaminase-like protein NOL 1.0 2.8 0.9 0.9 1.3 0.5 P 1.2 P 1.0 P 0.7 P 1.0 P
T02O04.7 15996_at Jasmonate-inducible protein isolog NOL 1.0 3.7 1.3 1.0 0.6 2.5 P 0.2 A 1.4 P 0.0 A 1.0 P
Stress related
T17M13.16 17014_s_at Secreted ribonuclease 1, RNS1 NOL 0.8 2.5 1.0 1.8 1.0 1.2 P 0.6 P 1.0 P 0.5 P 1.0 P
F22H5.18 17865_at Isoflavonoid reductase homolog NOL 1.0 0.9 1.1 2.5 0.9 0.8 P 1.6 P 1.3 P 1.0 P 0.9 P
F1N13.110 18699_i_at (T3)d Cold-regulated, cor6.6 NOL 1.0 1.8 0.3 3.1 1.0 0.8 P 1.7 P 1.0 P 1.6 P 1.0 P
T20B5.8 18954_at Putative cysteine proteinase inhibitor B NOL 1.0 1.4 1.0 6.2 0.7 1.0 P 1.0 P 0.9 P 1.4 P 1.1 P
F14N23.25 20060_at Similar to glutathione S-transferase TSI-1 OL-LS 1.0 2.5 1.0 1.8 0.7 1.0 P 1.8 P 0.8 P 2.3 P 1.0 P
Transcription factors
MXC7.6 13297_at Auxin-responsive protein IAA2 NOL 1.2 0.8 1.0 3.0 0.7 1.5 P 1.5 P 0.7 A 1.0 P 0.5 P
F17L21.14 20032_at Protein with squamosa promoter binding domain OL-HS 1.0 3.0 1.0 5.5 0.7 1.0 P 3.8 P 1.0 P 4.0 P 1.0 P
Chloroplast residents
F27I1.2 17054_s_at Lhcb4:3 protein NOL 0.8 2.0 1.0 2.7 0.7 0.6 P 1.3 P 1.0 P 1.2 P 0.8 P
F11A3.19 18665_r_at Photosystem I subunit IV precursor NOL 1.5 1.0 0.9 2.9 0.8 1.7 P 1.0 A 0.9 A 1.0 A 1.4 P
FCAALL.5 18670_g_at Chloroplast-targeted β-amylase enzyme NOL 1.1 1.0 1.0 2.5 0.8 1.0 P 1.0 P 0.9 P 0.2 P 1.2 P
Unclassified
T20K18.70 13177_at Growth factor-like protein with mutT domain OL-HS 0.8 1.4 1.0 3.0 0.9 1.0 P 8.1 P 0.7 P 14.4 P 0.7 P
T8O5.20 13591_at (D2T2)d Similar to NADH dehydrogenase chain 4 OL-HS 1.0 3.6 0.7 6.2 0.6 1.0 P 4.1 P 0.7 P 5.8 P 0.9 P
T20G20.2 15004_at Putative microtubule-associated protein NOL 1.0 1.2 0.8 2.9 0.9 0.7 P 1.2 P 1.0 P 1.8 P 0.8 P
F13H10.22 15839_at Unknown protein OL-HS 0.7 1.4 0.9 4.3 1.0 1.0 P 3.4 P 0.5 P 10.4 P 0.5 P
T16L4.30 16311_at Unknown protein OL-LS 0.8 5.9 1.0 16.1 0.9 0.8 A 6.5 P 1.0 P 6.1 P 0.9 P
T4L20.210 20178_at Unknown protein OL-HS 1.0 4.6 1.0 5.4 0.9 0.8 P 8.8 P 0.9 P 4.4 P 1.0 P
a

OL-HS, overlapping genes at high-stringency criteria; OL-LS, overlapping genes at low-stringency criteria; NOL, no overlapping genes.

b

FV, fold variation. Boldface numbers indicate genes meeting the 1000-5P-2.5 criteria. Italicized boldface numbers indicate genes that were identified when lower stringency criteria were used (1000-3P-2).

c

F, absolute call flags: P, present; M, marginal; A, absent.

d

Numbers of replicas on the Affymetrix GeneChip for this gene meeting the restrictions in tunicamycin (T) and DTT (D) are shown in parentheses.

HHS Vulnerability Disclosure