Table 5.
Consensus Putative UPR cis-Acting Elements for Upregulated Genes
| CC-N12-CCACG Element
|
CCACGTCA Element
|
||||||
|---|---|---|---|---|---|---|---|
| AGI Gene | Description | Stranda | Positionb | Motif | Strand | Position | Motif |
| At1g09180 | Putative SAR1B | + | 877 | CCAgTccccattacCCACG | |||
| At5g08970 | ATAF2 | + | 685 | CCAATaatattacgCCACG | |||
| At2g02810 | UDP-galactose transporter, AtUtr1 | + | 920 | CCAgTgattagcttCCACG | |||
| At4g34630 | Unknown protein | − | 880 | CCAgTtatatgttgCCACG | |||
| At4g16660 | HSP-like protein | − | 891 | CCAATgaaaatattCCACG | + | 929 | tttattCCACGTCAgtgt |
| At4g24190 | HSP90 isolog | + | 820 | CCAATacaaaactaCCACG | + | 795 | gtcgctCCACGTCAagaa |
| At2g41490 | GPT | − | 928 | CCAATaaggatttgCCACG | − | 914 | gatttgCCACGTCgcttc |
| At4g19880 | Putative GST | − | 350 | CCtgaagacgagatCCACG | |||
| At1g27350 | Protein with SBP domain | + | 854 | CCAATtatagacggCCACG | |||
| At5g61790 | Calnexin, CNX1 | − | 887 | CCAATcataacaggCCACG | − | 873 | aacaggCCACGTCAttca |
| At4g11800 | Unknown protein | − | 549 | CCAcTgtacaacacCCACG | |||
| At2g47470 | Putative PDI | + | 884 | CgAtTgatatcacgCCACG | + | 898 | atcacgCCACGTCAttgt |
| At4g14430 | Carnitine racemase-like protein | + | 127 | CCgAattagacaacCCACG | |||
| At1g07670 | ER-type Ca2+-transporting ATPase4 | + | 218 | CCAATgatgtgtcaCCACG | + | 271 | catgtgCCACGTCAcgtg |
| At1g08650 | Putative Ca2+-dependent protein kinase | − | 154 | CCttatccattgggCCACG | |||
| At4g10040 | Cytochrome c | + | 892 | CCAcTatttagacgCCACG | |||
| At1g09080 | BiP-like protein | − | 784 | aagcagaCACGTgAcatt | |||
| At4g34630 | Unknown protein | − | 878 | atgttgCCACGTaAggat | |||
| At1g09210 | Calreticulin-2 | − | 918 | ctgcagCCACGTaAtcca | |||
| At2g45070 | sec61 β-subunit homolog | − | 913 | aaaatgCCACcTCAgcgt | |||
| At5g42020 | BiP | + | 813 | attggtCCACGTCAtctc | |||
| At4g24920 | Protein sec61 γ-subunit-like | − | 820 | gttgtgCCAtGTCAgcaa | |||
| At4g01810 | Putative protein transport factor | + | 829 | ttaataCCACGTCAtgca | |||
| At1g11890 | Similar to vesicle trafficking | + | 841 | aacgagCCACGTCAtcaa | |||
| At1g67360 | Stress-related protein, putative | − | 885 | acttgtCCACGTaAtcca | |||
| At4g02880 | Unknown protein | + | 241 | aattatCCACGTCggtct | |||
| At2g44080 | Unknown protein | + | 639 | tccatcCCACGTCAtcat | |||
| At2g47180 | Galactinol synthase | − | 279 | aattaaCCACGTgAaaaa | |||
Conserved nucleotides from each motif are shown in boldface, the two ERSE-II motifs in UPR upregulated genes are underlined, and conserved nucleotides with ERSE-I and mammalian UPRE motifs are shown in uppercase.
a
+, forward; −, reverse.
b
Position from the 5′ terminus of the ATG initiation codon.