TABLE 2.
Standard errors of prediction for point-normalized spectra
RMS | Cross-valid lin1 | Cross-valid lin2 | Cross-valid quad3 | Direct valid | Norm frequency | Frequencies in model | Model →% of the secondary structure | |
---|---|---|---|---|---|---|---|---|
α-Helix | 21.8 | 6.9 | 6.6 | 7.2 | 6.2 | 1641 | 1545–1565–1530 | −37.082 + 223.655 × A1545 − 86.095 × A1565 − 82.481 × A1530 |
β-Sheet | 17.6 | 6.6 | 6.6 | 6.6 | 6.1 | 1653 | 1638–1530–1656 | −68.570 + 70.386 × A1638 − 21.433 × A1530 + 32.581 × A1656 |
β-Turns | 4.2 | 3.4 | 3.7 | 3.6 | 3.1 | 1565 | 1685–1563–1687 | 102.655 + 31.310 × A1685 − 94.161 × A1563 − 23.584 × A1687 |
Random | 11.4 | 8.6 | 10.4 | 10.4 | 8.4 | 1552 | 1679–1553–1687 | −569.019 + 87.979 × A1679 + 593.514 × A1553 − 89.106 × A1687 |
310-Helix | 3.2 | 2.8 | 3.0 | 2.8 | 2.6 | 1545 | 1546–1547– 1512 | 1147.907 − 2192.463 × A1546 + 1058.537 × A1547 − 15.803 × A1512 |
Random + turns + 310-helices | 12.8 | 8.0 | 9.1 | 10.3 | 7.2 | 1543 | 1671–1587–1541 | −252.957 + 47.236 × A1671 + 47.690 × A1587 + 242.377 × A1541 |
For legend, see Table 1. The spectra were normalized here so that the absorbance at the wavenumber indicated in the column Norm frequency is 1. The normalization frequencies were optimized for the linear model (Cross-valid lin1) but not for the quadratic model (Cross-valid quad3). Note that the best values for the linear models for each structure between Tables 1 and 2 are in boldface type.