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. 2006 Mar;16(3):414–427. doi: 10.1101/gr.4237406

Table 1.

Functional categorization of glucose- and ABA-responsive genes

Category Genes in category n Regulated k PvP — log10
Glucose up-regulated
    Sulfur assimilation 62 16 8.2256*
    Translation 152 33 7.3065*
    Abiotic stress 454 47 6.3331*
    Nucleotide synthesis 186 25 6.1691*
    Protein targeting 524 48 5.2264*
    Secondary metabolism methyl transferases 19 5 3.6209*
    Lipid transfer proteins 15 4 3.2126
    Secondary metabolism flavonoid synthesis 93 9 2.6203
    Nucleotide sugar transferases 70 9 2.6128
    Ribosomal proteins 258 30 2.5031
Glucose down-regulated
    Amino acid degradation 142 21 6.9827*
    Trehalose metabolism 22 6 4.9561*
    Glutaredoxins 40 8 4.7538*
    Gluconeogenesis 6 3 4.5454*
    Storage proteins 28 5 3.2793
    Ethylene synthesis 109 8 2.3114
    Pentose phosphate pathway 19 3 2.30036
    Lipid degradation 113 9 2.0985
    Ubiquitin conjugation 37 4 1.9157
    Light-mediated signaling 128 11 2.4742
ABA up-regulated
    Abscisic acid metabolism 66 13 7.5126*
    Secondary metabolism 307 28 6.7421*
    General carbohydrate degradation 299 22 3.6926*
    Storage and lipid transfer proteins 88 9 3.1427
    Lipid metabolism 485 28 2.9821
    Salicylic acid metabolism 17 3 2.6772
    P450 and degradation enzymes 739 37 2.4363
    Trehalose metabolism 22 3 2.2472

P-values of <0.05 (corrected for multiple comparisons using the Bonferroni correction) in each regulated group are indicated with an asterisk:

  • Glucose up-regulated, 143 functional categories, —log10 Pv = 3.445.
  • Glucose down-regulated, 116 functional categories, —log10 Pv = 3.365.
  • ABA up-regulated, 113 functional categories, —log10 Pv = 3.354.