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Error Rates for Estimation of Missing Genotypes with fastPHASE for CEPH HapMap Data, Chromosome 22[Note]
| Missing Data (%) |
fastPHASE Error |
| 10 | .033 |
| 20 | .037 |
| 30 | .042 |
| 40 | .051 |
| 50 | .064 |
| 60 | .089 |
| 70 | .137 |
| 80 | .227 |
| 90 | .358 |
Note.— We masked 10%–90% of the data at random, which resulted in 93,476–837,853 missing genotypes, and applied fastPHASE to the entire chromosome 22.
