. 2006 Feb 17;78(4):629–644. doi: 10.1086/502802

Table 5.

Accuracy of Haplotype-Inference Methods for Simulated Data (Trials 1, 2, and 4) and Real Data from HapMap^[Note]

	Trial 1		Trial 2		Trial 4			Real Data
Method	Individual Error	Switch Error	Individual Error	Switch Error	Individual Error	Switch Error	Missing^a	Individual Error	Switch Error
fastPHASE ()	.653	.045	.887	.069	.760	.058	.091	.879	.055
PHASE version 2	*.355*	*.024*	*.404*	*.022*	*.620*	*.053*	*.075*	*.815*	*.051*
wphase	.480	.037	.521	.037	.680	.066	.090	…	…
HAP	.886	.065	.971	.098	.906	.074	.116	.919	.066
HAP2	.735	.069	.990	.151	.871	.087	.150	.901	.078

Note.— Results for wphase (N. Patterson, personal communication), HAP (Halperin and Eskin 2004), and HAP2 (Lin et al. 2002) were obtained by Marchini et al. (2006).

Genotype-imputation error rate.