Table 4.
Sample characteristics |
Allele frequency distribution tests |
Haplotype tests |
||||||||
Location | Sample Size (Chromosomes) | Polymorphic Sites | Nucleotide Diversity (×104) |
θ W (×104) |
Tajima’s D | Fu and Li’s D | Fu and Li’s F | Fay and Wu’s H (P) | Fu’s Fs | Common Haplotype Frequency |
Entire region (13.3 kb) | ||||||||||
Whole | 155 | 123 | 4.5 | 16.5 | −2.32a | −2.75a | −3.06b | −46.2 (.002)b | −27.7b | |
African | 52 | 99 | 9.1 | 16.5 | −1.59a | −1.05 | −1.54 | −28.7 (.021)a | −5.8 | |
European | 50 | 7 | .5 | 1.2 | −1.57a | −1.17 | −1.54 | −.9 (.287) | −6.6b | |
Chinese | 52 | 47 | 1.9 | 7.8 | −2.60b | −3.20b | −3.59b | −33.5 (.000)b | −5.2 | |
Active | 8 | 61 | 19.7 | 17.7 | ||||||
Inactive (whole) | 147 | 76 | 2.0 | 10.3 | ||||||
Inactive (African) | 46 | 57 | 4.4 | 9.7 | ||||||
Inactive (non-African) | 101 | 21 | .7 | 3.0 | ||||||
LD block (8.6 kb) | ||||||||||
Whole | 155 | 90 | 4.5 | 18.2 | −2.37b | −2.46a | −2.91b | −38.4 (.005)b | −18.5b | 99b |
African | 52 | 71 | 9.1 | 17.9 | −1.71a | −1.29 | −1.77 | −23.2 (.027)a | −2.9 | 21b |
European | 50 | 4 | .3 | 1 | −1.67a | −1.26 | −1.63 | .2 (.398) | −4.3a | 43 |
Chinese | 52 | 37 | 2.1 | 9.3 | −2.62b | −3.16b | −3.58b | −25.1 (.000)b | −3.2 | 35b |
Active | 8 | 50 | 20.9 | 21.9 | ||||||
Inactive (all) | 147 | 43 | 1.4 | 8.8 | ||||||
Inactive (African) | 46 | 29 | 2.9 | 7.5 | ||||||
Inactive (non-African) | 101 | 14 | .6 | 3.1 |
P<.05.
P<.01 (one-sided tests).