TABLE 1.
Disease | Length (bp) | GC content (%) | Coding region (% chromo- some size) | No. of predicted ORFs | Avg ORF length (bp) | % of:
|
No. of:
|
Plasmid length (bp) | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
ORFs with a functional assignment | Conserved hypothetical ORFs | Hypo- thetical ORFs | tRNAs | rRNA operons | tmRNAs | |||||||
PDb | 2,519,802 | 51.8 | 79.9 | 2,066 | 979 | 65.9 | 33.3 | 0.8 | 49 | 2 | 1 | 1,345 |
CVCc | 2,679,305 | 52.7 | 80.6 | 2,249 | 964 | 57.4 | 38.2 | 4.4 | 49 | 2 | 1 | 1,285 and 51,158 |
Temecula was isolated from grapevine in California, and 9a5c was isolated from citrus in São Paulo, Brazil (33).
See supplementary material mentioned in the text for gene maps, gene lists, and categories.
The data presented are from our updated genome analysis. This revision removed small hypothetical ORFs, now thought to be false predictions.