TABLE 2.
Sequences of oligonucleotides used in PCR, Lightcycler, or Northern blotting reactions in this study
| Primer or probe | Oligonucleotide sequence (5′→3′) |
|---|---|
| Lightcycler | |
| spa-F | CAGATAACAAATTAGCTGATAAAAACAT |
| spa-R | CTAAGGCTAATGATAATCCACCAAATAC |
| cna-F | AACGAACAAGTATACACCAGGAGAG |
| cna-R | TTTGCTTTTTCATCTAATCCTGTC |
| 16SrRNA-F | ACACAGTCTGAGATGATTGTAGTGTTC |
| 16SrRNA-R | GCTTTCACATCAGACTTAAAAA |
| SA1278-F | ACACAGTCTGAGATGATTGTAGTGTTC |
| SA1278-R | ATCGAAAGACTTAGGATATTTCATTGC |
| gyrA-F | CTGAGCGTAATGGTAATGTTGTATG |
| gyrA-R | TGCATCTTCTTTTACTTTAGCAACC |
| dnaA-F | CCAAAAGAAACAACAAAACCTTCTA |
| dnaA-R | AAACCAACCCCTCCATAGATAAATA |
| hup-F | CTGGTTCAGCAGTAGATGCTGTATT |
| hup-R | ATCTTTTAATGCTTTACCAGCTTTG |
| purH-F | ATCAAGAAGTATTGACGCGATTAAG |
| purH-R | GATTGTTGTGGATTTTCTCCATATC |
| PCR | |
| spa-F | CATACAGGGGGTATTAATTTGAAAA |
| spa-R | AGTAGAAAGTGTTGAGGCGTTTCAG |
| 16SrRNA-F | TTTTATGGAGAGTTTGATCCTGGCTC |
| 16SrRNA-R | ATATCCTTAGAAAGGAGGTGATCCAG |
| Northern blotting | |
| WAN014GIY | CCTGATACACATCTTTCTACGTGTG |
| cna-F | AACGAACAAGTATACACCAGGAGAG |