TABLE 2.
Determination of Fe-S center types in LdpA by using multiple sequence motif search methods
| Center type | Statistical supporta
|
||||||
|---|---|---|---|---|---|---|---|
| BLAST against PDB | BALSA | FingerPRINTScan | eMOTIF | Block | InterProb | BIOINGBUc | |
| 4Fe-4S | 5.10 × 10−6 | 9.90 × 10−6 | + | ||||
| 3Fe-4S | 1.34 × 10−3 | + | |||||
| 7Fe-8S | 0.40 | 3.68 × 10−4 | 4.40 × 10−8 | 1.20 × 10−5 | + | 14.8 | |
| 8Fe-8S | 1.70 × 10−6 | 12.7 | |||||
a
Only the most significant (or best) hits are shown. Statistical support (P or E value) is indicated whenever available.
b
For the InterPro search, + means a positive search result with no quantitative value.
c
In the BIOINBGU threading search, the statistical confidence level is 12.