TABLE 1.
Predicted Tat substrate and component numbers in a diverse group of prokaryotes
| Organism | Domain | Phylum | Open reading frames | No. of TATFIND 1.2 positives | Tat component(s)a
|
||
|---|---|---|---|---|---|---|---|
| A/E | B | C | |||||
| Streptomyces coelicolor A3(2) | Bacteria | Actinobacteria | 7899 | 145 | 1 | — | 1 |
| Mesorhizobium loti | Bacteria | Proteobacteria (alpha) | 7279 | 95 | 1 | — | 1 |
| Sinorhizobium meliloti | Bacteria | Proteobacteria (alpha) | 6206 | 94 | 1 | 1 | 1 |
| Caulobacter crescentus | Bacteria | Proteobacteria (alpha) | 3737 | 88 | 1 | 1 | 1 |
| Ralstonia solanacearum | Bacteria | Proteobacteria (beta) | 5116 | 71 | 1 | 1 | 1 |
| Halobacterium sp. strain NRC-1 | Archaea | Euryarchaeota | 2446 | 68 | 1 | — | 2 |
| Pseudomonas aeruginosa | Bacteria | Proteobacteria (gamma) | 5567 | 57 | 1 | 1 | 1 |
| Xanthomonas campestris 3391 | Bacteria | Proteobacteria (gamma) | 4181 | 55 | 1 | 1 | 1 |
| Agrobacterium tumefaciens | Bacteria | Proteobacteria (alpha) | 5299 | 51 | 1 | 1 | 1 |
| Xanthomonas axonopodis 306 | Bacteria | Proteobacteria (gamma) | 4312 | 50 | 1 | 1 | 1 |
| Escherichia coli K-12 | Bacteria | Proteobacteria (gamma) | 4279 | 34 | 2 | 1 | 1 |
| Escherichia coli O157:H7 EDL933 | Bacteria | Proteobacteria (gamma) | 5335 | 33 | 2 | 1 | 1 |
| Salmonella enterica serovar Typhimurium LT2 | Bacteria | Proteobacteria (gamma) | 4559 | 33 | 2 | 1 | 1 |
| Escherichia coli O157:H7 | Bacteria | Proteobacteria (gamma) | 5361 | 32 | 2 | 1 | 1 |
| Mycobacterium tuberculosis H37Rv | Bacteria | Actinobacteria | 3927 | 31 | 1 | — | 1 |
| Nostoc sp. strain PCC 7120 | Bacteria | Cyanobacteria | 6129 | 31 | 2 | — | 1 |
| Mycobacterium tuberculosis CDC1551 | Bacteria | Actinobacteria | 4187 | 29 | 1 | — | 1 |
| Salmonella enterica serovar Typhi | Bacteria | Proteobacteria (gamma) | 4768 | 28 | 2 | 1 | 1 |
| Deinococcus radiodurans | Bacteria | Deinococcus-Thermus | 2997 | 22 | 2 | — | 1 |
| Synechocystis sp. strain PCC 6803 | Bacteria | Cyanobacteria | 3167 | 21 | 2 | — | 1 |
| Yersinia pestis | Bacteria | Proteobacteria (gamma) | 4083 | 19 | 2 | 1 | 1 |
| Brucella melitensis | Bacteria | Proteobacteria (alpha) | 3199 | 19 | 1 | — | 1 |
| Xylella fastidiosa 9a5c | Bacteria | Proteobacteria (gamma) | 2768 | 17 | 1 | 1 | 1 |
| Aquilex aeolicus | Bacteria | Aquificae | 1529 | 15 | 2 | — | 1 |
| Corynebacterium glutamicum | Bacteria | Actinobacteria | 3041 | 15 | 2 | — | 1 |
| Pyrobaculum aerophilum | Archaea | Euryarchaeota | 2605 | 14 | 1 | — | 1 |
| Neisseria meningitidis Z2491 | Bacteria | Proteobacteria (beta) | 2065 | 12 | 1 | 1 | 1 |
| Pasteurella multocida | Bacteria | Proteobacteria (gamma) | 2015 | 12 | 1 | 1 | 1 |
| Campylobacter jejuni | Bacteria | Proteobacteria (epsilon) | 1654 | 11 | 1 | 1 | 1 |
| Neisseria meningitidis MC58 | Bacteria | Proteobacteria (beta) | 2079 | 11 | 1 | 1 | 1 |
| Haemophilus influenzae | Bacteria | Proteobacteria (gamma) | 1714 | 9 | 1 | 1 | 1 |
| Archaeoglobus fulgidus | Archaea | Euryarchaeota | 2420 | 9 | 2 | — | 2 |
| Mycobacterium leprae | Bacteria | Actinobacteria | 2720 | 9 | 1 | — | 1 |
| Vibrio cholerae | Bacteria | Proteobacteria (gamma) | 3835 | 7 | 2 | 1 | 1 |
| Bacillus subtilis | Bacteria | Firmicutes | 4112 | 7 | 3 | — | 2 |
| Aeropyrum pernix | Archaea | Crenarchaeota | 1840 | 7 | 2 | — | 1 |
| Methanosarcina mazei Goe1 | Archaea | Euryarchaeota | 3371 | 6 | 2 | — | 2 |
| Treponema pallidum | Bacteria | Spirochaetes | 1036 | 6 | — | — | —/PICK> |
| Bacillus halodurans | Bacteria | Firmicutes | 4066 | 5 | 2 | — | 2 |
| Methanosarcina acetivorans strain C2A | Archaea | Euryarchaeota | 4540 | 5 | 2 | — | 2 |
| Sulfolobus solfataricus | Archaea | Crenarchaeota | 2977 | 5 | 3 | — | 2 |
| Chlorobium tepidum TLS | Bacteria | Chlorobi | 2252 | 5 | 2 | — | 1 |
| Pyrococcus horikoshii | Archaea | Euryarchaeota | 1801 | 5 | — | — | — |
| Sulfolobus tokodaii | Archaea | Crenarchaeota | 2826 | 4 | 2 | — | 1 |
| Helicobacter pylori 26695 | Bacteria | Proteobacteria (epsilon) | 1576 | 3 | 1 | 1 | 1 |
| Helicobacter pylori J99 | Bacteria | Proteobacteria (epsilon) | 1491 | 3 | 1 | 1 | 1 |
| Clostridium perfringens | Bacteria | Firmicutes | 2723 | 3 | — | — | — |
| Pyrococcus furiosus DSM3638 | Archaea | Euryarchaeota | 2065 | 3 | — | — | — |
| Thermotoga maritima | Bacteria | Thermotogae | 1858 | 3 | — | — | — |
| Listeria innocua | Bacteria | Firmicutes | 3043 | 2 | 1 | — | 1 |
| Staphylococcus aureus Mu50 | Bacteria | Firmicutes | 2714 | 2 | 1 | — | 1 |
| Staphylococcus aureus MW2 | Bacteria | Firmicutes | 2632 | 2 | 1 | — | 1 |
| Staphylococcus aureus N315 | Bacteria | Firmicutes | 2625 | 2 | 1 | — | 1 |
| Thermoplasma acidophilum | Archaea | Euryarchaeota | 1482 | 2 | 1 | — | 1 |
| Thermoplasma volcanium | Archaea | Euryarchaeota | 1500 | 2 | 1 | — | 1 |
| Chlamydia trachomatis | Bacteria | Chlamydiae | 895 | 2 | — | — | — |
| Chlamydophila pneumoniae AR39 | Bacteria | Chlamydiae | 1112 | 2 | — | — | — |
| Chlamydophila pneumoniae CWL029 | Bacteria | Chlamydiae | 1054 | 2 | — | — | — |
| Pyrococcus abyssi | Archaea | Euryarchaeota | 1769 | 2 | — | — | — |
| Listeria monocytogenes EGD-e | Bacteria | Firmicutes | 2846 | 1 | 1 | — | 1 |
| Ricketisia conorii | Bacteria | Proteobacteria (alpha) | 1374 | 1 | 1 | — | 1 |
| Ricketisia prowazekii | Bacteria | Proteobacteria (alpha) | 835 | 1 | 1 | — | 1 |
| Chlamydia muridarum | Bacteria | Chlamydiae | 909 | 1 | — | — | — |
| Chlamydophila pneumoniae J138 | Bacteria | Chlamydiae | 1069 | 1 | — | — | — |
| Clostridium acetobutylicum | Bacteria | Firmicutes | 3848 | 1 | — | — | — |
| Lactococcus lactis subsp. lactis | Bacteria | Firmicutes | 2267 | 1 | — | — | — |
| Methanothermobacter thermautotrophicus | Archaea | Euryarchaeota | 1873 | 1 | — | — | — |
| Streptococcus pneumoniae R6 | Bacteria | Firmicutes | 2043 | 1 | — | — | — |
| Streptococcus pyogenes | Bacteria | Firmicutes | 1697 | 1 | — | — | — |
| Streptococcus pyogenes MGAS8232 | Bacteria | Firmicutes | 1845 | 1 | — | — | — |
| Thermoanaerobacter tengcongensis | Bacteria | Firmicutes | 2588 | 1 | — | — | — |
| Buchnera aphidicola | Bacteria | Proteobacteria (gamma) | 545 | — | — | — | — |
| Buchnera sp. strain APS | Bacteria | Proteobacteria (gamma) | 564 | — | — | — | — |
| Fusobacterium nucleatum 25586 | Bacteria | Fusobacteria | 2067 | — | — | — | — |
| Methanococcus jannaschii | Archaea | Euryarchaeota | 1729 | — | — | — | — |
| Methanopyrus kandleri AV19 | Archaea | Euryarchaeota | 1687 | — | 1 | — | — |
| Mycoplasma genitalium | Bacteria | Firmicutes | 484 | — | — | — | — |
| Mycoplasma pneumoniae | Bacteria | Firmicutes | 689 | — | — | — | — |
| Mycoplasma pulmonis | Bacteria | Firmicutes | 782 | — | — | — | — |
| Streptococcus pneumoniae TIGR4 | Bacteria | Firmicutes | 2094 | — | — | — | — |
| Ureaplasma urealyticum | Bacteria | Firmicutes | 614 | — | — | — | — |
| Borrelia burgdorferi | Bacteria | Spirochaetes | 1638 | — | — | — | — |
a
—, no homologs identified.