Table 2.
Hydrogen bonds in peptide 3.
Donor | Acceptor | D–A [Å] | H–A [Å] | C=O···N angle [°] |
---|---|---|---|---|
molecule A | ||||
N1 | O10[a] | 3.276 | 2.49 | 140 |
N2 | O9 | 2.973 | 2.12 | 160 |
N3 | O8[a] | 2.894 | 2.03 | 168 |
N4 | O7 | 3.078 | 2.20 | 143 |
N5 (Pro) | ||||
N6 | W1 | 2.815 | 1.95 | |
N7 | O4 | 2.881 | 2.03 | 139 |
N8 | O3[b] | 2.930 | 2.04 | 149 |
N9 | O2 | 2.957 | 2.09 | 157 |
N10 | O1[b] | 2.932 | 2.05 | 151 |
molecule B | ||||
N11 | O20′[b] | 3.290 | 2.40 | 144 |
N12 | O19 | 2.887 | 2.02 | 155 |
N13 | O18[b] | 2.813 | 1.96 | 174 |
N14 | O17 | 3.054 | 2.17 | 147 |
N15 (Pro) | ||||
N16 | O6[c,d] | 2.990 | 2.11 | 123 |
N17 | O14 | 2.933 | 2.08 | 133 |
N18 | O13[a] | 2.891 | 2.01 | 148 |
N19 | O12 | 2.937 | 2.08 | 154 |
N20 | O11[a] | 2.865 | 1.98 | 166 |
solvent | ||||
W1 | O15 | 2.746 | ||
W1 | O17 | 2.882 | ||
W2[e] | O5 | 2.813 | ||
W2 | O7 | 2.914 |
Symmetry of acceptor, 1+x, y, z.
Symmetry of acceptor, −1+x, y, z.
Symmetry of acceptor, x, 1+y, z.
Direct hydrogen bond between donor and acceptor▪▪ok?▪▪.
The N16 atom does not participate in a hydrogen bond with W2 (N16···W2=3.76 Å). Compare to N6···W1= 2.81 Å.