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. 2006 Mar 20;6:5. doi: 10.1186/1472-6807-6-5

Table 4.

Best QSAR models for GFA and G/PLS based on full binding groove in comparison with the PLS method. *PLS Models based on Cerius GFA & G/PLS Models respectively.

Model QSAR Analysis 1Cerius 2SYBYL Equation Length
Terms + Constant
STATISTICAL PARAMETERS

TRAINING SET TEST SET

LOF SEP r 2 (CV) r 2 SEE PRESS r r 2 PRESS
Total + Electrostatic + VDW GFA 1 17 0.308 0.772 0.583 23.557 0.776 0.602 34.625
G/PLS 1 16 0.779 0.590 12.387 0.740 0.547 39.552
PLS2 (GFA) 17 0.604 0.630 0.521 0.531 20.526 0.734 0.539 34.247
PLS2 (G/PLS) 16 0.571 0.615 0.438 0.473 15.869 0.708 0.501 41.424
Electrostatic + VDW GFA 1 19 0.349 0.767 0.616 21.719 0.731 0.534 39.464
G/PLS 1 15 0.723 0.541 21.359 0.737 0.544 52.287
PLS 2 (GFA) 19 0.675 0.194 -0.055 0.611 25.038 0.613 0.376 66.115
PLS2 (G/PLS) 15 0.558 0.669 0.526 0.466 15.863 0.803 0.645 48.045
Total GFA 1 18 0.200 0.861 0.751 11.071 0.781 0.610 51.105
G/PLS 1 15 0.665 0.299 39.635 0.796 0.634 40.751
PLS2 (GFA) 18 0.654 0.496 0.350 0.576 23.550 0.777 0.604 58.579
PLS2 (G/PLS) 15 0.583 0.697 0.537 0.471 16.669 0.861 0.742 35.160