Table VIII.
Fold-changes of transposon-related element expression
T87, Calli derived from the T87 habituated cell line; FC, freshly derived nonhabituated calli; BA, the cytokinin benzyl adenine.
| NimbleGen Probe ID | Gene Name | Common Name | T87 − BA/FC + BAa,b | FC + BA/FC − BAb,c |
|---|---|---|---|---|
| ATHA0004S00021937 | At4g08680 | MuDR-A transposon protein related | 177.69 | 1.08 |
| ATHA0004S00004017 | At1g78095 | Mutator-related transposase | 106.42 | 1.10 |
| ATHA0004S00025253 | At5g27345 | Mutator-related element with long TIRs | 101.84 | 1.54 |
| ATHA0004S00026213 | At5g35054 | Transposon protein related | 23.01 | 1.19 |
| ATHA0004S00014187 | At3g21040 | Copia-like retrotransposon family | 12.23 | 0.70 |
| ATHA0004S00026952 | At5g35792 | Mutator-related transposase related | 11.85 | 0.84 |
| ATHA0004S00013694 | At3g43563 | Athila retroelement ORF2 related | 11.82 | 0.92 |
| ATHA0004S00013783 | At3g43862 | Athila retroelement ORF2 related | 10.25 | 0.66 |
| ATHA0004S00003247 | At1g49090 | Plant transposase (Ptta/En/Spm) family | 8.98 | 1.15 |
| ATHA0004S00014185 | At3g21030 | Copia-like retrotransposon family | 7.60 | 0.71 |
| ATHA0004S00025144 | At5g33395 | Plant transposase (Ptta/En/Spm) family | 5.29 | 0.84 |
| ATHA0004S00014177 | At3g20990 | Copia-like retrotransposon family | 4.74 | 0.90 |
| ATHA0004S00002709 | At1g32590 | Copia-type polyprotein related | 4.47 | 0.94 |
| ATHA0004S00008664 | At2g14230 | Plant transposase (Ptta/En/Spm) family | 4.40 | 0.95 |
| ATHA0004S00016405 | At3g42253 | Athila retroelement ORF2 related | 4.12 | 0.86 |
| ATHA0004S00014179 | At3g21010 | Copia-like retrotransposon family | 4.17 | 0.70 |
| ATHA0004S00023293 | At5g32475 | Athila retroelement ORF2 related | 3.60 | 0.64 |
| ATHA0004S00023218 | At5g32306 | Athila retroelement ORF2 related | 3.27 | 0.74 |
| ATHA0004S00017990 | At3g42806 | Mutator-related transposase | 3.06 | 0.87 |
| ATHA0004S00015448 | At3g33067 | Athila retroelement ORF2 related | 3.00 | 0.98 |
| ATHA0004S00008019 | At2g13310 | Plant transposase (Ptta/En/Spm) family | 2.97 | 0.98 |
| ATHA0004S00010957 | At2g04770 | Plant transposase (Ptta/En/Spm) family | 2.89 | 0.87 |
| ATHA0004S00008228 | At2g30640 | Mutator-related transposase | 2.88 | 0.81 |
| ATHA0004S00008982 | At2g09187 | Athila ORF1 (Arabidopsis) related | 2.82 | 1.25 |
| ATHA0004S00027830 | At5g36655 | Plant transposase (Ptta/En/Spm) family | 2.77 | 0.80 |
| ATHA0004S00021430 | At4g04590 | Transposon protein related | 2.70 | 0.93 |
| ATHA0004S00013674 | At3g43523 | Ac-related transposase | 2.62 | 0.96 |
| ATHA0004S00013670 | At3g43510 | Copia-like retrotransposon family | 2.62 | 0.89 |
| ATHA0004S00006548 | At1g43840 | Plant transposase (Ptta/En/Spm) family | 2.52 | 0.73 |
| ATHA0004S00017917 | At3g42716 | Athila retroelement ORF2 related | 2.45 | 0.71 |
| ATHA0004S00011669 | At2g05650 | En/Spm-related transposon protein | 2.39 | 0.65 |
| ATHA0004S00011836 | At2g23500 | Mutator-related transposase | 2.24 | 0.73 |
| ATHA0004S00008009 | At2g13260 | Athila retroelement ORF1 protein related | 2.22 | 0.84 |
| ATHA0004S00011656 | At2g12240 | Plant transposase (Ptta/En/Spm) family | 2.12 | 1.16 |
| ATHA0004S00017980 | At3g42792 | Mutator-related transposase | 2.08 | 0.78 |
| ATHA0004S00001359 | At1g36460 | Plant transposase (Ptta/En/Spm) family | 2.03 | 0.78 |
| ATHA0004S00009369 | At2g14950 | Ac-related transposase | 2.02 | 0.94 |
The fold-change for the expression of each gene in habituated calli maintained in the absence of cytokinin is presented relative to the expression of the gene in nonhabituated calli maintained in the presence of cytokinin.
The transposon-related elements whose expression differed by a ≥2-fold change between habituated and nonhabituated calli are presented.
The fold-change for the expression of each gene in nonhabituated calli maintained in the presence of cytokinin is presented relative to the expression of the gene in nonhabituated calli maintained in the absence of cytokinin.