TABLE 1.
CVC strain-specific clones corresponding to chromosomal genes
| Clone | Position(s) in the CVC strain genome (size [bp])a | ORF | Function |
|---|---|---|---|
| CVC-2 | 32536-32817 (282)b | XFa0042 | Conjugal transfer |
| 1953158-1953439 (282) | XF2051 | Conjugal transfer | |
| CVC-10 | 1781908-1782274 (367) | XF1867 | Unknown |
| XF1868 | Unknown | ||
| CVC-16 | 1958074-1958272 (199) | XF2057 | Unknown |
| XF2058 | Conjugal transfer | ||
| CVC-25 | 495465-495850 (386+) | XF0496 | Unknown |
| CVC-29 | 1781622-1781907 (286) | XF1867 | Unknown |
| CVC-32 | 50439-50636 (198)b | XFa0064 | Unknown |
| CVC-40 | 2383787-2384141 (355+) | XF2505 | Phage related |
| CVC-46 | 20910-21078 (169)b | XFa0025 | Unknown |
| CVC-51 | 43160-43554 (395+)b | XFa0054 | Unknown |
| XFa0055 | Unknown | ||
| CVC-70 | 42215-42426 (212)b | XFa0053 | Unknown |
| CVC-75 | 1782759-1783098 (340+) | XF1869 | Phage related |
| XF1870 | Phage related | ||
| CVC-77 | 4416-4729 (314)b | XFa0007 | Conjugal transfer |
| CVC-83 | 1335614-1336004 (391+) | XF1384 | Unknown |
| CVC-86 | 531864-532260 (397+) | XF0539 | Fimbrillin |
| CVC-88 | 3560-3895 (336)b | XFa0005 | Conjugal transfer |
| XFa0006 | Conjugal transfer | ||
| CVC-89/95 | 1789260-1789644 (385+) | XF1881 | Unknown |
| CVC-90 | 343764-344102 (339) | XF0328 | Unknown |
a
The position in the CVC 9a5c chromosome, ORF identification, and assigned function were obtained at the X. fastidiosa genome website (http://aeg.lbi.ic.unicamp.br/xf). A plus sign indicates that the clone is larger than the size presented and has not been completely sequenced.
b
The sequence lies in the 51-kb megaplasmid.