Table 2.

Estimates of total numbers of superfamilies and folds. For various cutoffs of linkage parameters (W and E), total number of SMOG clusters (N) is shown, with the estimates for the average numbers of superfamilies and folds in a cluster (<m_SF> and <m_folds>), the average numbers of clusters with a superfamily and a fold assigned (<n>_SF and <n>_fold), and total numbers of superfamilies and folds (M_SF and M_folds).

W	E	N	<mSF>	<n>SF	MSF	<mfolds>	<n>fold	Mfolds
No clustering		13511	2.47	8.90	3750	1.93	16.9	1540
1.0	10-10	7237	2.77	5.40	3710	2.21	9.62	1660
1.0	10-5	6134	2.74	4.52	3720	2.24	7.90	1740
1.0	0.005	5464	2.70	3.94	3740	2.22	6.99	1740
0.5	10-10	5845	2.72	3.46	4590	2.22	6.46	2010
0.5	10-5	4900	2.39	2.72	4310	1.83	4.86	1850
0.5	0.005	4297	2.37	2.62	3890	1.90	4.93	1660
0.0	10-10	4886	1.90	2.12	4380	1.42	3.76	1850
0.0	10-5	3999	2.23	1.80	4510	1.36	3.24	1680
0.0	0.005	3364	2.30	1.67	4510	1.26	3.04	1390