TABLE 3.
Maximum likelihood, Bayesian average, and Bayesian 95% C.I.'s for other data sets under the Poisson, gamma, and preferred mixture models
| Estimate
|
|||||
|---|---|---|---|---|---|
| Author | Model | Parameter | Maximum likelihood |
Bayesian average |
95% credible interval [lower, upper] |
| P. Haffter | Poisson | Rate (λ) | 2.01 | 2.00 | [1.85, 2.17] |
| (Danio, 371 loci, 860 alleles) | Zero class | 13.4% | 13.5% | [11.4%, 15.4%] | |
| Gamma | Shape (α) | 0.01 | 0.05 | [0.01, 0.70] | |
| Scale (β) | 3.42 | 3.13 | [1.28, 3.99] | ||
| Rate (λ) | 0.03 | 0.16 | [0.03, 1.07] | ||
| Zero class | 98.5% | 93.2% | [46.2%, 98.6%] | ||
| 3CVF | Rate 1 (λ1) | 0.52 | 0.49 | [0.00, 0.81] | |
| Freq 1 | 0.76 | 0.75 | [0.31, 0.82] | ||
| Rate 2 (λ2) | 4.32 | 4.25 | [0.78, 5.23] | ||
| Freq 2 | 0.21 | 0.22 | [0.14, 0.37] | ||
| Rate 3 (λ3) | 14.2 | 14.0 | [4.92, 16.9] | ||
| Freq 3 | 0.03 | 0.04 | [0.01, 0.24] | ||
| Zero class | 45.3% | 44.0% | [34.3%, 53.2%] | ||
| A. C. Spradling | Poisson | Rate (λ) | 2.12 | 2.13 | [1.95, 2.28] |
| (Drosophila, 350 loci, 843 alleles) | Zero class | 12.0% | 11.9% | [10.0%, 14.1%] | |
| Gamma | Shape (α) | 0.01 | 0.04 | [0.01, 0.21] | |
| Scale (β) | 3.69 | 3.43 | [1.71, 4.49] | ||
| Rate (λ) | 0.04 | 0.15 | [0.03, 0.61] | ||
| Zero class | 98.5% | 93.6% | [49.0%, 98.5%] | ||
| 3CVF | Rate 1 (λ1) | 0.74 | 0.62 | [0.01, 0.89] | |
| Freq 1 | 0.83 | 0.76 | [0.31, 0.88] | ||
| Rate 2 (λ2) | 6.41 | 4.90 | [0.57, 7.37] | ||
| Freq 2 | 0.16 | 0.22 | [0.08, 0.51] | ||
| Rate 3 (λ3) | 23.1 | 15.3 | [4.74, 19.7] | ||
| Freq 3 | 0.01 | 0.03 | [0.00, 0.27] | ||
| Zero class | 39.5% | 39.9% | [32.4%, 48.1%] | ||
| M. Ashburner | Poisson | Rate (λ) | 7.56 | 7.60 | [6.99, 8.29] |
| (Drosophila, 55 loci, 416 alleles) | Zero class | 0.05% | 0.05% | [0.02%, 0.09%] | |
| Gamma | Shape (α) | 0.97 | 0.84 | [0.41, 1.59] | |
| Scale (β) | 6.74 | 7.33 | [4.22, 12.2] | ||
| Rate (λ) | 6.52 | 6.22 | [4.37, 8.13] | ||
| Zero class | 13.8% | 16.3% | [5.68%, 33.4%] | ||
| 3CVF | Rate 1 (λ1) | 2.08 | 2.05 | [0.46, 3.25] | |
| Freq 1 | 0.42 | 0.40 | [0.05, 0.60] | ||
| Rate 2 (λ2) | 8.64 | 8.10 | [3.24, 11.1] | ||
| Freq 2 | 0.45 | 0.44 | [0.30, 0.61] | ||
| Rate 3 (λ3) | 21.9 | 22.1 | [6.86, 31.2] | ||
| Freq 3 | 0.12 | 0.15 | [0.02, 0.33] | ||
| Zero class | 5.29% | 5.34% | [1.34%, 15.6%] | ||
| G. Jürgens | Poisson | Rate (λ) | 4.42 | 4.50 | [3.95, 5.12] |
| (Drosophila, 44 loci, 197 alleles) | Zero class | 1.20% | 1.11% | [0.56%, 1.82%] | |
| Gamma | Shape (α) | 0.80 | 1.08 | [0.477, 2.16] | |
| Scale (β) | 4.08 | 3.35 | [1.75, 8.31] | ||
| Rate (λ) | 3.25 | 3.73 | [2.49, 5.07] | ||
| Zero class | 27.4% | 19.6% | [7.78%, 36.7%] | ||
| 3CVF | Rate 1 (λ1) | 0.31 | 1.85 | [0.10, 3.20] | |
| Freq 1 | 0.27 | 0.53 | [0.24, 0.69] | ||
| Rate 2 (λ2) | 4.23 | 5.37 | [1.82, 8.88] | ||
| Freq 2 | 0.62 | 0.33 | [0.08, 0.48] | ||
| Rate 3 (λ3) | 13.7 | 13.5 | [4.03, 21.3] | ||
| Freq 3 | 0.11 | 0.13 | [0.02, 0.34] | ||
| Zero class | 20.7% | 8.66% | [1.68%, 30.5%] | ||
| E. Wieschaus | Poisson | Rate (λ) | 3.33 | 3.28 | [2.60, 4.00] |
| (Drosophila, 33 loci, 114 alleles) | Zero class | 3.6% | 3.75% | [1.67%, 5.6%] | |
| Gamma | Shape (α) | 0.54 | 0.80 | [0.23, 1.84] | |
| Scale (β) | 3.60 | 3.11 | [1.00, 6.50] | ||
| Rate (λ) | 1.93 | 2.43 | [1.11, 4.24] | ||
| Zero class | 44.1% | 32.4% | [11.2%, 61.0%] | ||
| 3C | Rate 1 (λ1) | 0.002 | 0.79 | [0.01, 2.25] | |
| Rate 2 (λ2) | 2.80 | 3.20 | [0.93, 5.85] | ||
| Rate 2 (λ2) | 6.58 | 8.37 | [3.45, 15.9] | ||
| Zero class | 35.4% | 16.6% | [3.92%, 35.5%] | ||
| M. Hülskamp | Poisson | Rate (λ) | 3.08 | 3.06 | [2.04, 4.13] |
| (Arabidopsis, 22 loci, 71 alleles) | Zero class | 4.60% | 4.68% | [1.57%, 10.5%] | |
| Gamma | Shape (α) | 5.00 | 1.59 | [0.52, 2.30] | |
| Scale (β) | 0.58 | 1.61 | [0.94, 4.70] | ||
| Rate (λ) | 2.90 | 2.56 | [1.42, 3.48] | ||
| Zero class | 10.2% | 22.0% | [12.2%, 40.9%] | ||
| 2C | Rate 1 (λ1) | 1.76 | 2.13 | [0.29, 2.95] | |
| Rate 2 (λ2) | 4.29 | 4.84 | [2.90, 10.50] | ||
| Zero class | 9.3% | 6.5% | [2.7%, 33.3%] | ||
| U. Mayer | Poisson | Rate (λ) | 8.55 | 8.61 | [6.57, 10.79] |
| (Arabidopsis, 9 loci, 77 alleles) | Zero class | 0.02% | 0.02% | [0.00%, 0.12%] | |
| Gamma | Shape (α) | 11.6 | 4.02 | [1.30, 5.95] | |
| Scale (β) | 0.73 | 2.12 | [1.27, 6.04] | ||
| Rate (λ) | 8.54 | 8.83 | [4.26, 12.3] | ||
| Zero class | 0.17% | 0.84% | [0.12%, 8.95%] | ||
| 2C | Rate 1 (λ1) | 6.01 | 6.73 | [0.46, 11.50] | |
| Rate 2 (λ2) | 10.7 | 21.5 | [7.35, 29.1] | ||
| Zero class | 0.12% | 0.06% | [0.00%, 24.8%] | ||