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. 2004 Dec;168(4):1975–1985. doi: 10.1534/genetics.104.031567

TABLE 2.

DNA variation and summary statistics

Mean nucleotide
diversity
Multilocus linkage
disequilibrium
Multilocus
HKA test
Multilocus Tajima's D test
Multilocus Fu and Li's D test
Mean D
Variance D
Mean D
Variance D
Pop. π θw Div.:
κ		 IA P X2 P Obs. Sim. % higher Obs. Sim. % higher Obs. Sim. % higher Obs. Sim. % higher
SAO 0.0027 0.0030 0.0142 0.8867 0.04* 4.868 0.676 −0.419 −0.036  84.64 0.874 0.926 53.20 0.305 −0.064  22.05 0.717 1.076  75.93
RIO 0.0024 0.0025 0.0146 −0.2113 0.73 5.232 0.632 −0.116 −0.029  58.63 0.975 0.944 44.59 −0.047 −0.056  50.27 1.235 1.142  38.63
CH 0.0062 0.0065 0.0147 1.0562 0.001* 9.121 0.426 −0.188 −0.065  65.59 1.160 0.878 20.97 −0.509 −0.079  90.06 1.302 1.017  23.12
KATH 0.0063 0.0075 0.0140 0.4747 0.047* 2.874 0.969 −0.657 −0.061  97.77* 1.264 0.890 14.75 −0.505 −0.077  89.90 1.250 1.017  26.67
PUR 0.0057 0.0068 0.0147 0.1745 0.17 5.992 0.741 −0.510 −0.061  93.22 0.426 0.877 91.24 −0.298 −0.070  76.05 0.794 1.014  66.50
BBS 0.0074 0.0074 0.0147 0.3139 0.08 5.138 0.822 0.020 −0.061  38.86 0.856 0.878 48.15 0.129 −0.071  26.65 1.065 1.010  40.26
MAN 0.0062 0.0076 0.0150 0.4431 0.07 8.226 0.512 −0.398 −0.054  87.37 0.758 0.884 60.82 −0.480 −0.073  89.16 1.533 1.009  10.16
CNX 0.0070 0.0071 0.0139 1.1784 0.001* 3.251 0.953 −0.334 −0.055  81.71 0.786 0.886 57.56 −0.029 −0.073  45.69 1.501 1.031  13.12
BKK 0.0108 0.0118 0.0142 0.3837 0.38 4.653 0.863 −0.572 −0.057  96.26* 0.204 0.863 99.51* −0.552 −0.077  92.65 0.323 0.991  97.92*
KL 0.0094 0.0107 0.0147 −0.0833 0.64 4.174 0.900 −0.676 −0.063  98.25* 0.544 0.857 80.83 −0.928 −0.079  99.41* 0.811 0.986  63.90
BOG 0.0113 0.0138 0.0161 −0.0930 0.69 2.482 0.981 −0.878 −0.071  99.75* 0.231 0.841 98.78* −0.823 −0.092  98.68* 0.499 0.977  90.30
KK 0.0124 0.0135 0.0156 −0.2527 0.97 1.961 0.992 −0.446 −0.065  90.65 0.664 0.839 66.59 −0.167 −0.089  60.34 1.340 0.984  14.83
MNL 0.0114 0.0133 0.0153 −0.0413 0.57 4.499 0.876 −0.590 −0.060  96.67* 0.401 0.844 91.93 −0.744 −0.084  97.88* 1.055 0.977  37.72
CEB 0.0112 0.0118 0.0150 0.5482 0.01* 1.997 0.992 −0.274 −0.065  75.78 0.332 0.853 95.72* 0.011 −0.084  38.99 0.702 0.977  74.35
KMJ 0.0059 0.0046 0.0134 −0.0136 0.50 8.097 0.524 0.115 −0.054  29.05 1.324 0.885 11.53 0.170 −0.0752   4.08 0.891 1.035  60.07
DAR 0.0098 0.0099 0.0161 0.1653 0.24 7.221 0.614 −0.192 −0.060  66.71 0.298 0.866 97.73* 0.064 −0.087  32.88 0.669 0.999  79.22

Pop., population; Div., divergence; IA, index of association; P, probability; X2, HKA test statistic; Obs., observed; Sim., simulated; % higher, percentage of simulated values higher than the observed ones; *, a statistically significant result.