. 2004 Dec;168(4):2037–2047. doi: 10.1534/genetics.104.032045

TABLE 1.

Copy-number estimation ofgecko inA. aegypti

Groupings	No. in database	No. in genome	Intragroup identity (%)^d
Full-length with TSD^a	93	1130	ND
Poly(dA)	62	750	94.4 ± 3.2
(CCAA)_n	23	280	98.2 ± 1.1
(CAAT)_n	7	∼90	93.2 ± 6.9 (98.0 ± 1.0)^e
(AGAT)_n	1	∼10^c	NA
All full-length copies^b	262	2900	ND
All gecko copies^b	647	7200	ND

^{^a}

Full length is defined as ≥170 bp. Only copies with perfect tandem repeats or poly(A) tract were included. Redundant copies were removed. Therefore, copy number was estimated assuming 8.2% coverage of the genome by nonredundant BAC-end sequences.

^{^b}

Redundant copies were not removed. Therefore, copy number was estimated assuming 9% coverage of the genome by the total BAC-end sequences.

^{^c}

The estimation is based on one copy, which is subject to large variation.

^{^d}

Average percentage of identity and standard deviation of all pairwise comparisons.

^{^e}

The numbers in parentheses were calculated after removing one divergent copy.