TABLE 3.
Divergence within and betweenP. viridiflava clades and comparison toP. syringae pathovars
| Whole-sequence % nucleotide differences, Dxy(JC-corrected)a |
% synonymous site divergence, Ks (JC-corrected)a
|
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Fragment | Pv A vs. B | Pph vs. Psy | Pph vs. Pto | Psy vs. Pto | Pv A | Pv B | Pv A vs. B | Pph vs. Psy | Pph vs. Pto | Psy vs. Pto |
| 7 | 7.9 (8.3) | 11.4 (12.4) | 10.8 (11.6) | 10.1 (10.9) | 7.2 (7.7) | 3.2 (3.3) | 28.8 (36.4) | 41.0 (59.3) | 38.2 (53.3) | 35.2 (47.6) |
| 17 | 8.2 (8.7) | 12.8 (14.0) | 10.7 (11.5) | 14.9 (16.6) | — | — | — | — | — | — |
| 20 | 5.8 (6.0) | 6.7 (7.0) | 6.2 (6.5) | 7.8 (8.2) | 7.2 (7.7) | 2.4 (2.4) | 22.5 (26.7) | 25.6 (31.3) | 23.5 (28.3) | 28.6 (36.0) |
| 26 | 3.6 (3.7) | 7.6 (8.0) | 6.0 (6.2) | 6.4 (6.7) | 6.3 (6.6) | 2.2 (2.2) | 16.6 (18.7) | 24.2 (29.3) | 19.1 (22.1) | 21.6 (25.4) |
| gyrB | 7.9 (8.4) | 7.4 (7.8) | 8.3 (8.7) | 8.5 (9.0) | 10.3 (11.6) | 4.6 (5.5) | 33.4 (44.2) | 31.4 (40.6) | 33.4 (44.2) | 36.1 (49.3) |
a
Values for P. viridiflava clades are averages over all pairs.