TABLE 3.
Sequences of N termini, tryptic peptides, and deduced primers
Peptide | Amino acid sequence (N-C)a | Deduced oligonucleotide sequence |
---|---|---|
IDS-epimerase | ||
N terminus | MFTTKLAEKVVSAWKAKISQPALKAAQDb | AARGCNGCNCARGACGG (5′-3′) |
Peptide 1 | AAQDGVIDTVAAALGGVTEH | |
Peptide 2 | WGVNQR | |
Peptide 3 | F(S/X)IEANIGAAL(F/L)DGEV(S/X)LA(S/X)FEIE | |
Peptide 4 | FDMPSETTFSGTTGY(Y/X)DIVVH | GTYTCNSWNGGCATRTCGAA (3′-5′) |
BY6-lyase | ||
N terminus | MRERLSASPNELIVKHLIGPRLFGNLDRDFLEM(X/S)KVNb | NGMGAYTTYYTNGAAATG (5′-3′) |
Peptide 1 | TGELLGFDGLIENSLDAVGSR | ATNARGCCRTCRAAGCC (3′-5′) |
Peptide 2 | NTIASVVIGNAPQLTSDE | |
Peptide 3 | FNLEHALIEDVGAD | |
Peptide 4 | TVMTGYTHGQPGQPI | |
SLRS7-lyase | ||
N terminus | MESKVS(R/X)(X/R)LNEPLAK | GTSWSSCGSCGSCTSAACGAACC (5′-3′) |
Peptide 1 | QFAYLTEVNQAHL(L/X)MXX | |
Peptide 2 | QVTADGLGFGSLVHN(T/X)LDA(X/V)X | |
Peptide 3 | VAQDFYVWSTPEFGLL(X/S)F(X/P)Q(X/Q)XX | |
Peptide 4 | (X/C)(V/L)(T/S)(L/L)(D/F)(E/F)(S/L)(V/V)(A/V)(T/G) | |
(D/S) (V/L)(E/A) (D/P)(G/K)LVADAGLSF | ||
Peptide 5 | ASEFADAVMPGYTHLQPAQ(P/X)ITFG | ACGGSCCGATRTGSGTRGASGTCGG (3′-5′) |
Segments used for the design of oligonucleotides for PCR are underlined.
From reference 9.