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. 2006 Apr;72(4):2824–2828. doi: 10.1128/AEM.72.4.2824-2828.2006

TABLE 3.

Sequences of N termini, tryptic peptides, and deduced primers

Peptide Amino acid sequence (N-C)a Deduced oligonucleotide sequence
IDS-epimerase
    N terminus MFTTKLAEKVVSAWKAKISQPALKAAQDb AARGCNGCNCARGACGG (5′-3′)
    Peptide 1 AAQDGVIDTVAAALGGVTEH
    Peptide 2 WGVNQR
    Peptide 3 F(S/X)IEANIGAAL(F/L)DGEV(S/X)LA(S/X)FEIE
    Peptide 4 FDMPSETTFSGTTGY(Y/X)DIVVH GTYTCNSWNGGCATRTCGAA (3′-5′)
BY6-lyase
    N terminus MRERLSASPNELIVKHLIGPRLFGNLDRDFLEM(X/S)KVNb NGMGAYTTYYTNGAAATG (5′-3′)
    Peptide 1 TGELLGFDGLIENSLDAVGSR ATNARGCCRTCRAAGCC (3′-5′)
    Peptide 2 NTIASVVIGNAPQLTSDE
    Peptide 3 FNLEHALIEDVGAD
    Peptide 4 TVMTGYTHGQPGQPI
SLRS7-lyase
    N terminus MESKVS(R/X)(X/R)LNEPLAK GTSWSSCGSCGSCTSAACGAACC (5′-3′)
    Peptide 1 QFAYLTEVNQAHL(L/X)MXX
    Peptide 2 QVTADGLGFGSLVHN(T/X)LDA(X/V)X
    Peptide 3 VAQDFYVWSTPEFGLL(X/S)F(X/P)Q(X/Q)XX
    Peptide 4 (X/C)(V/L)(T/S)(L/L)(D/F)(E/F)(S/L)(V/V)(A/V)(T/G)
(D/S) (V/L)(E/A) (D/P)(G/K)LVADAGLSF
    Peptide 5 ASEFADAVMPGYTHLQPAQ(P/X)ITFG ACGGSCCGATRTGSGTRGASGTCGG (3′-5′)
a

Segments used for the design of oligonucleotides for PCR are underlined.

b

From reference 9.