TABLE 2.
Description of clonedtr-Acs, including the most significant TBLASTX homology to GenBank
| No. | tr-Ac | GenBank accession |
Bin location | Restriction enzyme |
Cloning method |
Fragment size (kb) |
Zea mays Accessiona |
E-value | Library sourceb |
|---|---|---|---|---|---|---|---|---|---|
| Mapped tr-Ac | |||||||||
| 1 | bti00191 | AY559204 | 2.02 | PstI | iPCR-1 | 6.1 | CC630662 | e−113 | MF |
| 2 | bti00207 | AY618476 | 4.07/4.08 | EcoRI (Ac900) | iPCR-1 | 4.6 | BZ788264 | 0.0 | High CoT |
| 3 | bti00209 | AY559195 | 4.06 | EcoRI (Ac900) | iPCR-1 | 2.7 | CG379427 | 3e−88 | MF |
| 4 | bti00226 | AY559177 | 6.00 | EcoRI (Ac900) | iPCR-1 | 4.1 | CC384514 | 3e−45 | High CoT |
| 5 | bti00245 | AY559181 | 4.08 | EcoRI (Ac700) | iPCR-1 | 3.1 | CC368252 | e−104 | High CoT |
| 6 | bti00252 | AY559208 | 1.04/1.05 | PstI | iPCR-1 | 5.4 | CG111052 | 2e−80 | High CoT |
| 7 | bti00257 | AY559233 | 1.05 | EcoRI (Ac900) | iPCR-1 | 3.1 | CG319773 | e−148 | MF |
| 8 | bti95004 | AY559216 | 1.02/1.03 | EcoRI (Ac900) | iPCR-1 | 3.8 | CG178263 | 6e−75 | High CoT |
| 9 | bti95006 | AY559192 | 1.03 | EcoRI (Ac900) | iPCR-1 | 3.8 | BZ819698 | e−116 | High CoT |
| 10 | bti95076 | AY559207 | 6.05 | EcoRI (Ac900) | iPCR-1 | 3.0 | CG007394 | e−118 | UF |
| 11 | bti99224 | AY559201 | 10.01/10.02 | EcoRI/KpnI | iPCR-1 | 2.0 | CC637600 | 6e−76 | MF |
| 12 | mon02901 | AY559179 | 6.04 | EcoRI (Ac900) | iPCR-1 | 3.2 | BZ532959 | e−118 | MF |
| 13 | mon03068 | AY618479 | 7.02 | EcoRI (Ac900) | iPCR-1 | 3.2 | CC617664 | e−175 | MF |
| 14 | mon03073 | AY559213 | 4.06 | EcoRI (Ac900) | iPCR-1 | 3.4 | CC415995 | 4e−80 | High CoT |
| 15 | mon03077 | AY618478 | 1.01 | EcoRI (Ac900) | iPCR-1 | 3.4 | CF633631 | e−122 | cDNA |
| 16 | mon03080 | AY618477 | 1.02 | EcoRI (Ac700) | iPCR-2 | 3.1 | CG159118 | 3e−75 | High CoT |
| 17 | mon03082 | AY559210 | 5.08/5.09 | EcoRI (Ac700) | iPCR-1 | 4.0 | CC649598 | e−180 | MF |
| 18 | mon00004 | AY559178 | 9.06/9.07 | EcoRI (Ac900) | iPCR-1 | 3.0 | CC613709 | e−134 | MF |
| 19 | mon00012 | AY559231 | 6.01 | EcoRI (Ac700) | iPCR-1 | 3.6 | BH895218 | 2e−99 | Mu |
| 20 | mon00030 | AY559197 | 5.03/5.04 | EcoRI (Ac900) | iPCR-2 | 3.8 | CG129443 | 4e−55 | High CoT |
| 21 | mon00038 | AY559229 | 6.01/6.02 | EcoRI (Ac900) | iPCR-2 | 6.2 | CG164865 | e−161 | High CoT |
| 22 | mon00044 | AY559219 | 5.06 | EcoRI (Ac900) | iPCR-1 | 3.0 | CC626710 | e−170 | MF |
| 23 | mon00060 | AY559220 | 7.04 | PstI | AIMS | 6.3 | CC624521 | 5e−18 | MF |
| 24 | mon00068 | AY559191 | 1.05 | PstI | AIMS | 5.1 | CC698616 | e−125 | MF |
| 25 | mon00072 | AY618471 | 7.03 | EcoRI (Ac700) | iPCR-3 | 6.1 | CG436891 | 3e−77 | MF |
| 26 | mon00084 | AY618474 | 2.08 | EcoRI (Ac700) | iPCR-3 | 6.1 | — | — | — |
| 27 | mon00092 | AY559212 | 9.07/9.08 | EcoRI (Ac700) | iPCR-2 | 4.6 | CG130353 | e−132 | High CoT |
| 28 | mon00098 | AY559226 | 7.04 | EcoRI (Ac700) | iPCR-1 | 2.9 | CG187250 | 6e−24 | High CoT |
| 29 | mon00106 | AY559176 | 1.03 | EcoRI (Ac900) | iPCR-3 | 8.0 | CC607430 | e−174 | MF |
| 30 | mon00108 | AY559206 | 8.07 | PstI | AIMS | 6.3 | CC709951 | 3e−38 | MF |
| 31 | mon00110 | AY559183 | 8.02 | EcoRI (Ac900) | AIMS | 2.8 | CC711298 | 5e−88 | MF |
| 32 | mon00126 | AY559211 | 4.02/4.03 | PstI | AIMS | 5.0 | CG375880 | 1e−61 | MF |
| 33 | mon00152 | AY559217 | 5.04/5.05 | EcoRI (Ac900) | iPCR-3 | 10.0 | BZ637224 | e−117 | MF |
| 34 | mon00178 | AY559203 | 3.05 | EcoRI (Ac900) | iPCR-2 | 3.4 | CG045942 | 6e−42 | High CoT |
| 35 | mon00186 | AY559221 | 1.06/1.07 | EcoRI (Ac700) | iPCR-3 | 5.7 | CC804870 | 1e−37 | UF |
| 36 | mon00192 | AY559223 | 1.03 | EcoRI (Ac700) | iPCR-3 | 7.4 | CC435538 | 1e−29 | High CoT |
| 37 | mon00200 | AY559202 | 1.10/1.11 | EcoRI (Ac900) | iPCR-3 | 9.5 | CC011003 | 6e−48 | High CoT |
| 38 | mon00212 | AY559232 | 5.01 | PstI | AIMS | 5.4 | CC375028 | e−141 | High CoT |
| 39 | mon00218 | AY559185 | 10.07 | EcoRI (Ac700) | iPCR-2 | 5.5 | CC718212 | 8e−93 | MF |
| 40 | mon00236 | AY559188 | 9.03 | EcoRI (Ac700) | iPCR-3 | 7.4 | CC441960 | 2e−71 | High CoT |
| 41 | mon00238 | AY559194 | 5.06 | EcoRI (Ac900) | AIMS | 5.2 | CC614740 | 7e−66 | MF |
| Repetitive tr-Ac | |||||||||
| 42 | bti00190 | AY559199 | Unknown | EcoRI (Ac900) | iPCR-1 | 3.1 | CC328152 | e−153 | MF |
| 43 | bti00194 | AY559209 | Unknown | EcoRI (Ac900) | iPCR-1 | 2.8 | CG291158 | e−151 | MF |
| 44 | bti00220 | AY559218 | Unknown | EcoRI (Ac700) | iPCR-1 | 4.7 | CC646925 | e−169 | MF |
| 45 | bti00225 | AY559205 | Unknown | EcoRI (Ac700) | iPCR-1 | 3.7 | — | — | — |
| 46 | bti00228 | AY618475 | Unknown | PstI | iPCR-1 | 6.8 | CG018677 | e−156 | MF |
| 47 | bti00238 | AY559172 | Unknown | EcoRI (Ac900) | iPCR-1 | 3.5 | CG311429 | 0.0 | MF |
| 48 | bti00242 | AY559198 | Unknown | EcoRI (Ac700) | iPCR-1 | 3.0 | CC808672 | 2e−36 | BAC |
| 49 | bti00256 | AY559227 | Unknown | EcoRI (Ac900) | iPCR-1 | 3.7 | CC735442 | 1e−44 | MF |
| 50 | bti99221 | AY618472 | Unknown | EcoRI (Ac900) | iPCR-1 | 2.7 | CC890275 | 2e−72 | BAC |
| 51 | mon00002 | AY559182 | Unknown | EcoRI (Ac700) | iPCR-2 | 5.2 | CG308013 | 1e−76 | MF |
| 52 | mon00020 | AY559174 | Unknown | EcoRI (Ac900) | AIMS | 3.0 | CC004576 | 2e−48 | Genomic |
| 53 | mon00028 | AY559200 | Unknown | EcoRI (Ac900) | iPCR-2 | 4.4 | CG222531 | 5e−71 | MF |
| 54 | mon00042 | AY559180 | Unknown | EcoRI (Ac900) | iPCR-2 | 2.4 | — | — | — |
| Repetitive tr-Ac | |||||||||
| 55 | mon00054 | AY559184 | Unknown | BamHI | AIMS | 5.2 | CG031998 | 4e−47 | High CoT |
| 56 | mon00058 | AY559230 | Unknown | PstI | AIMS | 5.0 | CC445930 | 2e−19 | High CoT |
| 57 | mon00066 | AY559186 | Unknown | EcoRI (Ac900) | iPCR-2 | 4.2 | CG240822 | 1e−34 | MF |
| 58 | mon00070 | AY559193 | Unknown | EcoRI (Ac900) | iPCR-1 | 2.7 | CC756012 | 4e−25 | cDNA |
| 59 | mon00080 | AY559196 | Unknown | EcoRI (Ac900) | iPCR-2 | 4.0 | BZ974435 | 3e−57 | High CoT |
| 60 | mon00102 | AY559173 | Unknown | EcoRI (Ac900) | iPCR-1 | 2.8 | CG371472 | e−111 | MF |
| 61 | mon00128 | AY618473 | Unknown | EcoRI (Ac900) | iPCR-3 | 3.3 | BZ809673 | e−139 | High CoT |
| 62 | mon00132 | AY559189 | Unknown | EcoRI (Ac900) | iPCR-3 | 10.0 | CC428556 | e−103 | High CoT |
| 63 | mon00160 | AY559190 | Unknown | EcoRI (Ac700) | iPCR-3 | 7.0 | BH408973 | 3e−85 | Mu |
| 64 | mon00166 | AY559225 | Unknown | PstI | iPCR-3 | 8.4 | BZ801148 | e−100 | High CoT |
| 65 | mon00168 | AY559214 | Unknown | EcoRI (Ac900) | iPCR-2 | 3.0 | CC696403 | 2e−71 | MF |
| 66 | mon00194 | AY559234 | Unknown | EcoRI (Ac700) | iPCR-3 | 6.2 | CG178282 | 2e−79 | High CoT |
| 67 | mon00204 | AY559228 | Unknown | EcoRI (Ac900) | AIMS | 3.6 | CC357240 | e−111 | High CoT |
| 68 | mon00210 | AY559187 | Unknown | EcoRI (Ac900) | iPCR-2 | 3.3 | BZ828425 | 2e−70 | High CoT |
| 69 | mon00240 | AY559224 | Unknown | PstI | iPCR-3 | 8.6 | BZ817976 | 3e−51 | High CoT |
a
Most significant homologies identified in TBLASTX searches of public databases.
b
Methylation filtration (MF), unfiltered (UF), and high-CoT libraries; rescue Mu flanking sequence libraries (Mu); or GenBank database.