TABLE 3.
tr-Ac | Database | E-value | Accession | Putative function |
---|---|---|---|---|
Mapped tr-Acs | ||||
bti00207 | nr | 5e−25 | AF466202 | Maize putative pol protein gene |
bti00209 | est | 3e−22 | AU067887 | Rice unknown gene |
bti00226 | nr | 2e−43 | AF413200 | Maize d8 gene (promotor and 5′-UTR region) |
bti00245 | est | 6e−46 | BQ163759 | Maize unknown gene |
mon03077 | est | e−122 | CF633631 | Maize unknown gene |
mon03082 | nr | 2e−76 | AY105664 | Maize unknown gene |
mon00012 | nr | 5e−69 | AY105294 | Maize unknown gene |
mon00044 | nr | 1e−59 | NM_122227 | Arabidopsis serine carboxypeptidase-related gene (coding sequence) |
mon00060 | nr | 9e−18 | CA619151 | Wheat unknown gene |
mon00110 | nr | 8e−45 | AF100769 | Maize receptor-like kinase gene (5′-UTR region) |
mon00200 | est | 2e−23 | BF728928 | Maize unknown gene |
mon00212 | est | 5e−37 | AW231322 | Maize unknown gene |
mon00218 | est | 4e−40 | CF244390 | Maize unknown gene |
Repetitive tr-Acs | ||||
bti00190 | nr | e−151 | AF466203 | Maize gypsy-type retrotransposon RIRE2 |
bti00194 | nr | 3e−15 | AY105224 | Maize unknown gene |
bti00220 | nr | e−110 | NM_105440 | Arabidopsis leucine-rich repeat family protein (coding sequence) |
bti00228 | nr | e−106 | AP003022 | Pseudogene, transposable element Txlc protein 2 (putative coding sequence) |
bti00242 | nr | 1e−25 | AF448416 | Maize retrotransposon Xilon2 LTR in bz genomic region |
bti00256 | nr | 7e−32 | D63956 | Maize gmlip15 gene (upstream of TATA box) |
mon00002 | nr | 1e−54 | AP002869 | Rice putative polygalacturonase PG2 gene (coding sequence) |
mon00020 | nr | 2e−48 | AF546189 | Maize repetitive region in 19-kD zein gene family |
mon00028 | nr | 1e−29 | AP004693 | Rice putative dioscorin class A precursor (coding sequence) |
mon00054 | nr | 2e−31 | AY109416 | Maize unknown gene |
mon00066 | nr | 2e−30 | AF464738 | Maize copia-type pol polyprotein |
mon00070 | nr | 1e−18 | AF050455 | Maize gypsy/Ty3-type retrotransposon Tekay LTR |
mon00102 | nr | 2e−63 | AC027037 | Rice putative cellulose synthase (coding sequence) |
mon00128 | nr | 1e−60 | U57899 | Maize repressor-like protein (in1) gene |
mon00132 | est | 5e−55 | AI939783 | Maize unknown gene |
mon00160 | nr | 3e−50 | AP005245 | Rice putative DNA-damage-repair toleration protein (coding sequence) |
mon00168 | nr | 7e−17 | AY144442 | Sorghum: located between Kaema-2 retrotransposon and MITE |
mon00194 | nr | 1e−15 | AF010283 | Sorghum: next to solo LTR of retroelement Leviathan |
mon00204 | est | 6e−46 | BG901272 | Maize unknown gene |
mon00210 | nr | 4e−40 | AC116033?? | Maize repetitive region in 19-kD zein gene family |
mon00240 | nr | 7e−32 | L22344 | Maize globulin-1 gene (promoter region) |