TABLE 2.

The average CVs for the parameter estimates of EM-LRT over 1000 simulations

		Proportion of missing genotype
Sample size (n)	Parameters of interest	10%	20%	30%	40%	50%	60%	70%
50	pj,k,l	0.767	0.812	—	—	—	—	—
50	μj	0.023	0.025	—	—	—	—	—
50	σ2	0.106	0.110	—	—	—	—	—
100	pj,k,l	0.536	0.571	0.603	—	—	—	—
100	μj	0.018	0.019	0.020	—	—	—	—
100	σ2	0.071	0.073	0.074	—	—	—	—
200	pj,k,l	0.386	0.402	0.423	0.453	0.487	0.541	—
200	μj	0.013	0.013	0.014	0.015	0.016	0.019	—
200	σ2	0.051	0.051	0.052	0.053	0.053	0.055	—
500	pj,k,l	0.241	0.253	0.267	0.285	0.306	0.336	0.387
500	μj	0.008	0.008	0.009	0.009	0.010	0.011	0.014
500	σ2	0.032	0.031	0.031	0.032	0.032	0.033	0.033
1000	pj,k,l	0.172	0.180	0.188	0.198	0.216	0.239	0.269
1000	μj	0.006	0.006	0.006	0.007	0.007	0.008	0.009
1000	σ2	0.021	0.023	0.022	0.022	0.023	0.023	0.023

Note that the average CVs for the parameter estimates were calculated only at those proportions of missing data when the EM-LRT remains valid or when the type I error starts to be inflated.