TABLE 2.

Nucleotide diversity withinD. miranda (values expressed as percentages)

	πb			θwc
Gene	Replacement	Synonymous	Silent	Replacement	Synonymous	Silent	Tajima's D: All sites
bcd	0.02	0.74	0.87	0.04	0.95	0.97	−0.63
Bruce	0.04	0.12	0.19	0.07	0.23	0.30	−1.53
Gld	0.02	0.75	0.75	0.03	0.60	0.60	0.51
hyd	0.05	0.00	0.13	0.10	0.00	0.23	−1.79
rosy	0.24	1.75	1.69	0.25	1.69	1.63	0.02
sry-alphaa	0.31	0.30	0.30	0.36	0.28	0.28	−0.45
ade3	0.00	0.09	0.26	0.00	0.10	0.29	−0.45
Adha	0.00	0.37	0.28	0.00	0.34	0.23	0.99
amd	0.02	0.61	0.27	0.05	0.61	0.35	−1.00
Ddc	0.21	0.32	0.32	0.19	0.31	0.31	0.32
Eno	0.02	0.43	0.34	0.04	0.66	0.52	−1.43
Lam	0.05	0.42	0.33	0.06	0.39	0.31	0.05
Uro	0.00	0.58	0.52	0.00	0.51	0.52	−0.06
AnnX	0.04	0.00	0.00	0.07	0.00	0.00	−1.14
Cyp1a	NA	NA	0.49	NA	NA	0.63	−0.92
Gapdh2	0.00	0.00	0.00	0.00	0.00	0.00	NA
scutea	0.11	0.36	0.25	0.13	0.42	0.34	−0.89
sesBa	0.00	0.10	0.32	0.00	0.20	0.41	−0.74
sisAa	0.41	0.84	0.75	0.43	0.65	0.84	−0.42
swallowa	0.05	0.18	0.11	0.09	0.15	0.09	−0.83
Average	0.08	0.42	0.41	0.10	0.42	0.44	−1.11

NA, not available.

^aSequence data are from Yi et al. (2003) after realignment with McAlign (Keightley and Johnson 2004).

^bPairwise nucleotide diversity (Nei 1987).

^cNucleotide site variability is based on the number of segregating sites (Watterson 1975).