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. 2005 Mar;169(3):1589–1599. doi: 10.1534/genetics.104.029553

TABLE 1.

Direct estimation of mutation rates for 30 microsatellite loci

Motif
Locus Ch Chinese spring Sham I Mutation rate C.I. 95% +2 +1 −1 −2 −4 −5 −6
Xgwm164 1A  (GA)16 (GA)20  0 0; 5.2 × 10−4 . . . . . . .
Xgwm99a 1A  (GT)20 (GT)29  0 0; 5.3 × 10−4 . . . . . . .
Xgwm413 1B  (GA)18 (GA)20  3.5 × 10−4 1.1 × 10−4; 1.3 × 10−3 . . 2 . . . .
Xgwm153a 1B  (GA)18 (GA)>34  10−3 4.7 × 10−4; 2.5 × 10−3 .  4 1 . . . .
Xgwm339 2A  (GA)22 (GA)25  5.3 × 10−4 1.9 × 10−4; 1.6 × 10−3 .  3 . . . . .
Xgwm372a 2A  (GA)>51 (GA)26  0 0; 6.4 × 10−4 . . . . . . .
Xgwm312a 2A  (GA)37 (GA)30  6.4 × 10−4 2.3 × 10−4; 1.9 × 10−3 .  3 . . . . .
Xgwm257a 2B  (GT)30 (GT)6GC(GT)5  0 0; 6.4 × 10−4 . . . . . . .
Xgwm374a 2B  (GT)17 (GT)10  0 0; 6.4 × 10−4 . . . . . . .
Xgwm148a 2B  (GT)22 (GT)11  0 0; 6.4 × 10−4 . . . . . . .
Xgwm526a 2B  (GA)16 (GA)18  0 0; 6.4 × 10−4 . . . . . . .
Xgwm2 3A  (GT)18 (GT)5GA(GT)5  3.6 × 10−4 1.1 × 10−4; 1.3 × 10−3 .  2 . . . . .
Xgwm247 3B  (GA)24 (GA)14  1.7 × 10−4 4.2 × 10−5; 9.6 × 10−4 .  1 . . . . .
Xgwm285 3B  (GA)27 (GA)19  0 0; 5.2 × 10−4 . . . . . . .
Xgwm160a 4A (GA)12GG(GA)7  0 0; 5.3 × 10−4 . . . . . . .
Xgwm160b 4A (GA)4+14+7+2  0 0; 5.2 × 10−4 . . . . . . .
Xgwm601 4A  (GA)17 (GA)18  0 0; 5.2 × 10−4 . . . . . . .
Xgwm6a 4B (GA)22AA(GA)10  2.1 × 10−3 1.2 × 10−3; 3.6 × 10−3 1 10 . . 1 . .
Xgwm6b 4B (GA)53  1.6 × 10−3 8.3 × 10−4; 2.9 × 10−3 .  5 2 . . 1 1
Xgwm495a 4B  (GA)20 (GA)12A(GA)12  0 0; 5.3 × 10−4 . . . . . . .
Xgwm126 5A  (GT)15 (GT)12 . . . . . . .
Xgwm156 5A  (GT)14 (GT)17  0 0; 5.2 × 10−4 . . . . . . .
Xgwm604 5B  (GA)29 (GA)28  5.2 × 10−4 1.9 × 10−4; 1.5 × 10−3 .  3 . . . . .
Xgwm234 5B  (GA)16(GT)20 (GT)8(GA)3GG  0 0; 5.2 × 10−4 . . . . . . .
(GA)15
Xgwm213 5B  (GA)35 (GA)38  0 0; 5.2 × 10−4 . . . . . . .
Xgwm494 6A  (GT)13 (GT)3CG(GT)8  0 0; 5.2 × 10−4 . . . . . . .
Xgwm334 6A  (GA)19 (GA)16  1.8 × 10−4 4.3 × 10−5; 9.8 × 10−4 .  1 . . . . .
Xgwm260 7A  (GA)20 (GA)11  3.7 × 10−4 1.1 × 10−4; 1.3 × 10−3 .  1 . 1 . . .
Xgwm297 7B  (GT)12(GA)18 (GA)18(GT)20  3.4 × 10−4 10−4; 1.2 × 10−3 . . 1 1 . . .
Xgwm537a 7B  (GT)18(TA)13 (GT)28  7 × 10−4 2.8 × 10−4; 1.8 × 10−3 .  1 3 . . . .

The last seven columns give the distribution of the mutation events at each locus, +x (respectively −x) representing a mutation causing the gain (respectively loss) of x repeats. (—) Missing data. (·) No mutation of the corresponding size was observed. Ch, chromosome location in the variety Chinese spring; C.I. 95%, 95% confidence interval.

a

Loci for which the mutation rate has been estimated in a previous study (Thuillet et al. 2002).