TABLE 1.
Direct estimation of mutation rates for 30 microsatellite loci
Motif
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Locus | Ch | Chinese spring | Sham I | Mutation rate | C.I. 95% | +2 | +1 | −1 | −2 | −4 | −5 | −6 |
Xgwm164 | 1A | (GA)16 | (GA)20 | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
Xgwm99a | 1A | (GT)20 | (GT)29 | 0 | 0; 5.3 × 10−4 | . | . | . | . | . | . | . |
Xgwm413 | 1B | (GA)18 | (GA)20 | 3.5 × 10−4 | 1.1 × 10−4; 1.3 × 10−3 | . | . | 2 | . | . | . | . |
Xgwm153a | 1B | (GA)18 | (GA)>34 | 10−3 | 4.7 × 10−4; 2.5 × 10−3 | . | 4 | 1 | . | . | . | . |
Xgwm339 | 2A | (GA)22 | (GA)25 | 5.3 × 10−4 | 1.9 × 10−4; 1.6 × 10−3 | . | 3 | . | . | . | . | . |
Xgwm372a | 2A | (GA)>51 | (GA)26 | 0 | 0; 6.4 × 10−4 | . | . | . | . | . | . | . |
Xgwm312a | 2A | (GA)37 | (GA)30 | 6.4 × 10−4 | 2.3 × 10−4; 1.9 × 10−3 | . | 3 | . | . | . | . | . |
Xgwm257a | 2B | (GT)30 | (GT)6GC(GT)5 | 0 | 0; 6.4 × 10−4 | . | . | . | . | . | . | . |
Xgwm374a | 2B | (GT)17 | (GT)10 | 0 | 0; 6.4 × 10−4 | . | . | . | . | . | . | . |
Xgwm148a | 2B | (GT)22 | (GT)11 | 0 | 0; 6.4 × 10−4 | . | . | . | . | . | . | . |
Xgwm526a | 2B | (GA)16 | (GA)18 | 0 | 0; 6.4 × 10−4 | . | . | . | . | . | . | . |
Xgwm2 | 3A | (GT)18 | (GT)5GA(GT)5 | 3.6 × 10−4 | 1.1 × 10−4; 1.3 × 10−3 | . | 2 | . | . | . | . | . |
Xgwm247 | 3B | (GA)24 | (GA)14 | 1.7 × 10−4 | 4.2 × 10−5; 9.6 × 10−4 | . | 1 | . | . | . | . | . |
Xgwm285 | 3B | (GA)27 | (GA)19 | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
Xgwm160a | 4A | — | (GA)12GG(GA)7 | 0 | 0; 5.3 × 10−4 | . | . | . | . | . | . | . |
Xgwm160b | 4A | — | (GA)4+14+7+2 | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
Xgwm601 | 4A | (GA)17 | (GA)18 | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
Xgwm6a | 4B | — | (GA)22AA(GA)10 | 2.1 × 10−3 | 1.2 × 10−3; 3.6 × 10−3 | 1 | 10 | . | . | 1 | . | . |
Xgwm6b | 4B | — | (GA)53 | 1.6 × 10−3 | 8.3 × 10−4; 2.9 × 10−3 | . | 5 | 2 | . | . | 1 | 1 |
Xgwm495a | 4B | (GA)20 | (GA)12A(GA)12 | 0 | 0; 5.3 × 10−4 | . | . | . | . | . | . | . |
Xgwm126 | 5A | (GT)15 | (GT)12 | — | — | . | . | . | . | . | . | . |
Xgwm156 | 5A | (GT)14 | (GT)17 | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
Xgwm604 | 5B | (GA)29 | (GA)28 | 5.2 × 10−4 | 1.9 × 10−4; 1.5 × 10−3 | . | 3 | . | . | . | . | . |
Xgwm234 | 5B | (GA)16(GT)20 | (GT)8(GA)3GG | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
(GA)15 | ||||||||||||
Xgwm213 | 5B | (GA)35 | (GA)38 | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
Xgwm494 | 6A | (GT)13 | (GT)3CG(GT)8 | 0 | 0; 5.2 × 10−4 | . | . | . | . | . | . | . |
Xgwm334 | 6A | (GA)19 | (GA)16 | 1.8 × 10−4 | 4.3 × 10−5; 9.8 × 10−4 | . | 1 | . | . | . | . | . |
Xgwm260 | 7A | (GA)20 | (GA)11 | 3.7 × 10−4 | 1.1 × 10−4; 1.3 × 10−3 | . | 1 | . | 1 | . | . | . |
Xgwm297 | 7B | (GT)12(GA)18 | (GA)18(GT)20 | 3.4 × 10−4 | 10−4; 1.2 × 10−3 | . | . | 1 | 1 | . | . | . |
Xgwm537a | 7B | (GT)18(TA)13 | (GT)28 | 7 × 10−4 | 2.8 × 10−4; 1.8 × 10−3 | . | 1 | 3 | . | . | . | . |
The last seven columns give the distribution of the mutation events at each locus, +x (respectively −x) representing a mutation causing the gain (respectively loss) of x repeats. (—) Missing data. (·) No mutation of the corresponding size was observed. Ch, chromosome location in the variety Chinese spring; C.I. 95%, 95% confidence interval.
Loci for which the mutation rate has been estimated in a previous study (Thuillet et al. 2002).