TABLE 3.
Description of selected chromosomal segments containing colocalizing QTL for multiple diseases
| Chr. (interval)a |
QTLb | QTL donor | Phenotypes | No. cDNAs (no. genes) |
Positional candidatesc |
|---|---|---|---|---|---|
| 3 | Bl | Moroberekan | spl3 | 296 | Glyceraldehyde-3-phosphate dehydrogenase |
| (1.1–15.2) | ShB | Teqing | (458) | [J013118G18]d | |
| BB | Lemont | Ubiquitin family protein [J023111G18]d | |||
| Lethal leaf-spot 1 [001-003-D01] | |||||
| Catalase 2 [J013060B21] | |||||
| Peroxidase [002-113-H03, J023075H05] | |||||
| Flavanone 3-hydroxylase [006-204-B12] | |||||
| Plant defensin [J023019E10] | |||||
| 8 | Bl | Moroberekan | Pi33 | 499 | LRR receptor-like protein kinase [J013065M07]e |
| (16.4–58.2) | Bl | Minghui 63 | Pi9(t) | (2143) | Wound-responsive family protein [J023052C20]e |
| Bl | Sanhuangzhan 2 | Pi11(t) | Photosystem II 10-kD polypeptide [J023063I15]e | ||
| ShR | Moroberekan | myb family transcription factor [J033071N16]d | |||
| ShB | Lemont | Uridylyltransferase related [J013155B11]d | |||
| BB | Teqing | Germin-like protein [001-026-B02, 001-108-B05, 006-204-C06, 006-204-G10, 006-205-B04] |
|||
| bZIP, ocs-element binding factor [002-121-A09] | |||||
| CC-NBS-LRR similar to RPM1 [J033077K04, J023106I20] | |||||
| 9 | Bl | Minghui 63 | 555 | AP2 domain protein RAP2.12 [001-038-B05]e | |
| (51.7–91.8) | Bl | Minghui 63 | (1083) | Aldehyde dehydrogenase [002-113-B08]e | |
| Bl | Zhenshan 97 | U2 snRNP auxiliary factor small subunit | |||
| ShB | Jasmine 85 | [J013025G09]e | |||
| ShB | Minghui 63 | Plasma membrane intrinsic protein [006-310-H08]e | |||
| ShB | Minghui 63 | Carbonic anhydrase family protein [J023022G09]d | |||
| BB | Teqing | Cytochrome P450 [J013099E24]d | |||
| RYMV | Azucena | Nodulin family protein [J023012O05]d | |||
| Ankyrin-like protein [J023122L09] WRKY [J013121C08, J013151N12, J013001K23] | |||||
| Putative AVR9 elicitor response protein [J013146K16] | |||||
| Blight-associated protein p12 [001-111-F08] | |||||
| CC-NBS-LRR similar to RPM1 [J033046D04] | |||||
| bZIP [J023043A12, J033108B13, J023110J21] | |||||
| Putative MYB4 [006-203-E04] | |||||
| 12 | Bl | Moroberekan | spl1 | 313 | No match [001-006-F10]e |
| (40.2–64.4) | Bl | Owarihatamochi | lrd21 | (1904) | RuBisCO small subunit [J013149A10]e |
| Bl | Teqing | Pita | Photosystem I reaction center subunit XI | ||
| ShB | Teqing | Pitq6 | [006-203-B01]e | ||
| BB | Teqing | Pi20 | DNAJ heat shock protein [J023062J10]d | ||
| RYMV | Azucena | Pi6(t) | Expressed protein [J013002M10]d | ||
| Pi12(t) | Pathogen-responsive α-dioxygenase [J023106K06]d | ||||
| Pi21(t) | CC-NBS-LRR similar to RPP8 [J023064J22] | ||||
| Pi31(t) Pi32(t) | CC-NBS-LRR similar to RPM1 [J033037L18, J013005L22, J023048O04, J033021G15] |
||||
| CC-NBS similar to RPP13 [J023026M23, 002-164-A12] | |||||
| Heat-shock protein 70 [J033107J07] Wound-induced basic protein [001-042-B08, J013098D06] Glutathione S-transferase [J033043B09] |
a
The chromosomal interval according to the JRGP 2000 centimorgan values.
b
QTL for disease resistance to BB, bacterial blight; Bl, rice blast; RYMV, rice yellow mottle virus; ShB, sheath blight; and ShR, sheath rot.
c
A subset of the numerous positional candidates to exemplify the diverse range of putative functions.
d
Positional candidates having a 5% false discovery rate of significant differential representation.
e
Positional candidates exhibiting significant differential representation after correcting for multiple tests by the Bonferroni procedure (α = 0.05).