TABLE 5.

Average pairwise linkage disequilibrium

Gene	No. sites	CCA1	CYT1	MLS1	PDR10	ZDS2
CCA1	11	0.75	0.73	0.76	0.82	0.65
CYT1	4	0.36	0.88	0.59	0.65	0.58
MLS1	20	0.33	0.28	0.94	0.75	0.69
PDR10	14	0.27	0.23	0.23	0.98	0.57
ZDS2	10	0.34	0.33	0.30	0.26	0.71

Linkage disequilibrium (LD) within a locus is shown on the diagonal, LD between loci is shown above the diagonal, LD between randomized data is shown below the diagonal. Linkage disequilibrium was measured by the absolute value of D′ for sites with a minor allele frequency of >10%. Only the 45 strains with complete data for all five genes were used.