Table 1.
Space group | P212121 |
Unit cell, Å | a = 100.6, b = 111.1, c = 188.5 |
Resolution, Å | 50.0–3.00 (3.07–3.00)* |
X-ray source | SSRL 11–1 |
No unique reflections | 42,610 |
Redundancy | 3.8 (3.7) |
Average I/σ(I) | 15.5 (2.1)* |
Completeness | 98.9 (99.3)* |
Rmerge† | 0.10 (0.81)* |
Refined residues | 1,716 |
Refined waters‡ | 144 |
Rcryst§ | 0.240 |
Rfree¶ | 0.290 |
Average B values, Å2 | |
Protein | 61.4 |
Waters | 33.9 |
Ligands | 67.5 |
Ramachandran plot, %∥ | 83.0, 16.5, 0.3, 0.3 |
rmsd Bond lengths, Å | 0.009 |
rmsd Bond angles, ° | 1.6 |
rmsd, rms deviation.
*Parentheses denote outer-shell statistics.
†Rmerge = ΣhΣi |Ii(h) − 〈I(h)〉|/ΣhΣi Ii (h), where 〈I(h)〉 is the average intensity of i symmetry-related observations of reflections with Bragg index h.
‡Although it is unusual to refine many waters at this resolution, many were unambiguous and refined well. The 144 waters bind to four Fab molecules in the asymmetric unit.
§Rcryst = Σhkl |Fo − Fc|/Σhkl |Fo|, where Fo and Fc are the observed and calculated structure factors.
¶Rfree was calculated as for Rcryst but on 5% of data excluded before refinement.
∥The values are percentages of residues in the most favored, additional allowed, generously allowed, and disallowed regions. AspL51, as expected, shows main-chain torsion angles in the disallowed regions but in a well defined γ-turn that is observed in most antibody structures (6).