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High confidence peptide identifications across 32 analyses using 50:1 relative prior probabilities without the Shewanella peptides in the PMT tag database
| Protein source (# of PMT tags) | Number of PMT tags observed | Average number of identifications | feature identifications |
| BSA (179) | 54 | 12.9 | 43.1% |
| Bovine (607) | 94 | 3.0 | 17.7% |
| Human (385) | 41 | 5.0 | 12.6% |
| Marker (18) | 12 | 6.9 | 5.1% |
| Trypsin (24) | 6 | 6.8 | 2.5% |
| Other (917) | 105 | 2.9 | 19.0% |
