TABLE 2 .
Annotation of FGENESH prediction coding sequences on BAC 76J21
|
Feature |
Coordinates |
No. of hits to soybean ESTs (E < e−04) |
TBLASTNa GenBank (E < e−03) |
BLASTP UniProt (E < 0.03) |
Annotationb |
|---|---|---|---|---|---|
| 1 | 279..677 | 4 | — | — | Unknown |
| 2 | 1856..3554 | 13 | Calypso 4-1 | Gag/pol polyprotein | Retroelement |
| 3 | 6982..8874 | 10 | — | — | Unknown |
| 4 | 29856..34589 | 15 | SIRE1 | Gag-pol polyprotein | LTR retrotranposon |
| 5 | 34791..36620 | 2 | SIRE1 | Envelope-like protein | LTR retrotranposon |
| 6 | 41539..42707 | 3 | STR120 | — | Tandem |
| 7 | 47026..47694 | 9 | SCB1 | Hypothetical protein | LTR retrotranposon |
| 8 | 51974..53860 | 14 | SCB1 | Hypothetical protein | LTR retrotranposon |
| 9 | 54862..55980 | 4 | Calypso 4-1 | Gag/pol polyprotein | Retroelement |
| 10 | 57411..57809 | 6 | — | — | Unknown |
| 11 | 63592..64086 | 19 | AOX | — | Hypothetical |
| 12 | 66348..66722 | 2 | MDH1 | — | Retroelement |
| 13 | 70800..71918 | 4 | Calypso 4-1 | Gag/pol polyprotein | Retroelement |
| 14 | 73861..74259 | 6 | — | — | Unknown |
| 15 |
78107..78391 |
3 |
MDH1 |
— |
Retroelement |
a
Top hits are shown to the GenBank nucleotide database.
b
“Unknown” indicates EST matches with no GenBank or UniProt hits; “hypothetical” indicates EST hit and GenBank hit.