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. Author manuscript; available in PMC: 2006 May 2.
Published in final edited form as: J Biol Chem. 2005 Dec 14;281(8):5042–5049. doi: 10.1074/jbc.M510454200

TABLE 1.

Mutants designed using PDA and SPA calculations

Position 29 30 38 41 64 66 75 mAb bindinga αLI domain tetramer bindingb %OccPDAc %OccSPAc
% of WT %
WT K L P E M Y T 100 100
%OccPDAc 19 2 2 7 20 12 5
%OccSPAc 0 0 92 0 0 0 9
1 K 76 ± 15 0 ± 5 1 51
2 Q 88 ± 8 19 ± 10 0 0
3 L 80 ± 6 154 ± 12 73 32
4 V 80 ± 5 242 ± 12 3 0
5 I 92 ± 7 187 ± 20 17 2
6 F 75 ± 5 114 ± 8 0 0
7 D 93 ± 6 55 ± 3 5 0
8 K 74 ± 10 116 ± 10 5 0
9 Q 75 ± 5 115 ± 5 8 49
10 W A 1 ± 2 1 ± 2 0, 0 54, 54 (54)
11 A L W 0 ± 1 3 ± 7 0, 73, 0 9, 32, 5 (2)
12 A W I 0 ± 1 312 ± 9 0, 0, 17 9, 5, 2 (1)
13 F V −1 ± 1 317 ± 9 0, 0 31, 0 (0)
a

ICAM-1 expression was determined with CBR IC1/11 mAb, which recognizes a conformation-dependent epitope in domain 3 of ICAM-1. % mAb binding = (mutant mAb MFI − background mAb MFI)/(wild-type mAb MFI − background mAb MFI) × 100.

b

% tetramer binding = (mutant tetramer MFI − background tetramer MFI)/(wild-type tetramer MFI − background tetramer MFI) × 100.

c

% occupancies from PDA and SPA calculations are provided for the WT (under the WT residue) and variants (across from each variant). % occupancy represents the % occurrence of the given amino acid in the set of 1000 output sequences from the Monte Carlo (PDA) or 300 output sequences from the Genetic Algorithm (SPA). For double and triple variants (1013), the % occupancy is presented for each substitution consecutively separated by a comma, with the % occupancy of the combined variant provided in parentheses.