. 2006 Jan;172(1):663–686. doi: 10.1534/genetics.105.046417

TABLE 1.

Expected scorings I_i, i = 1, 2, 3, 4 of haplotypes of model (17)

	Haplotype and related expected scoring
Genotype (G_A, G_B)	A₁B₁, I₁	A₁B₂, I₂	A₂B₁, I₃	A₂B₂, I₄
(A₁A₁, B₁B₁)	1	0	0	0
(A₁A₁, B₁B₂)			0	0
(A₁A₁, B₂B₂)	0	1	0	0
(A₁A₂, B₁B₁)		0		0
(A₁A₂, B₁B₂)	c₁	c₂	c₂	c₁
(A₁A₂, B₂B₂)	0		0
(A₂A₂, B₁B₁)	0	0	1	0
(A₂A₂, B₁B₂)	0	0
(A₂A₂, B₂B₂)	0	0	0	1

The constants are given by c₁ = P(A₁B₁|G_A = A₁A₂, G_B = B₁B₂) = P(A₁B₁)P(A₂B₂)/[2P(A₁B₁)P(A₂B₂) + 2P(A₁B₂)P(A₂B₁)] and c₂ = Inline graphic – c₁.