. 2006 Apr;172(4):2665–2681. doi: 10.1534/genetics.105.048975

TABLE 5.

Analysis of suspected recombinant data sets

Data set	ρ^a	Φ_w^b ^c	χ²	NSS	r²^a ^d	\|D′\|^a ^d	LPT^a ^d ^e
Candida	16	2.4 × 10⁻¹⁵^* (0.000^*)	0.000^*	0.000^*	0.000^* (0.000^*)	0.122 (0.001)	0.000^* (0.000^*)
Rana	—	5.5 × 10⁻³¹^* (0.000^*)	0.000^*	0.000^*	—	—
Cowdria	17	3.8 × 10⁻⁵^* (0.000^*)	0.041^*	0.001^*	0.167 (0.039^*)	0.043^* (0.029^*)	0.000^* (0.001^*)
H. pylori	≥100	9.3 × 10⁻³^* (0.004^*)	0.158	0.330	0.125 (0.000^*)	0.536 (0.003^*)	0.000^* (0.000^*)

P < 0.05.

Calculated on sites with only two alleles segregating with LDHat.

Each pair shows P-values calculated analytically and using a permutation test, respectively.

w was set to 100 for all tests.

Terms in parentheses show results on sites with minor allele frequencies >0.1.

Denotes the value of a likelihood permutation test calculated in LDHat.