TABLE 2.

Polymorphism and recombination parameters

Locus	l	h		S	D	RM	θ	ρ	ρ/θ	PLPT
pfoS	519	41	0.014	40	−0.797	7	9.349	42.126	4.506	0.345
pfoS FR	246	46	0.053	52	−0.614	9	11.832	2.01	0.17	0.892
rplL	363	9	0.007	12	−1.876	0	4.415	0	0	0.937
rplL FR	318	12	0.007	11	−1.478	0	3.643	15.578	4.276	0.042
plc	1194	104	0.014	131	−1.808	21	25.111	111.558	4.443	0
plc FR	197	39	0.002	24	−1.453	2	7.096	10.302	1.452	0.009
colA	924	94	0.011	103	−1.714	15	20.136	65.65	3.26	0
gyrA	918	49	0.007	44	−1.08	7	9.868	37	3.75	0.012
All (concatenated)	4679	180	0.009	417	−1.434	67	72.303	230.461	3.187	0
No toxin locia	2364	118	0.008	159	−1.278	27	29.615	83.236	2.181	0
Toxin loci	2315	164	0.011	258	−1.474	40	45.47	146.794	3.228	0

l, number of nucleotides; h, number of haplotypes; D, Tajima's D calculated from the total number of segregating sites; P_LPT, P-value for the LPT. All other abbreviations are defined in materials and methods.

^aAll loci are concatenated except for toxin loci (plc, plc FR, and colA).