TABLE 2.
TAC1 alleles present in the strains used in this study
| Polymorphism of TAC1 alleles (position of the nonsynonymous codons)
|
|||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Strain | Name of allele | Type of allele | 47 | 104 | 131 | 170 | 189 | 199 | 206 | 207 | 377 | 396 | 558 | 772 | 776 | 829 | 869 | 904 | 935 | 937 | 941 | 944 | 977 |
| CAF2-1 | TAC1-1 orf19.3188 (contig10-10170) | Wild type | TTA (L) | TTT (F) | CTA (L) | ATG (M) | TTT (F) | AGT (S) | CGT (R) | GTT (V) | GCT (A) | AAC (N) | ATT (I) | AAT (N) | GAC (D) | GAA (E) | CGA (R) | GAG (E) | TCA (S) | TCG (S) | CTG (S) | AAT (N) | AAT (N) |
| TAC1-2a orf19.10700 (contig10-20170) | Wild type | AAA (K) | GTC (V) | CTA (L) | ATG (M) | TTT (F) | AAT (N) | CAC (H) | GCT (A) | GCT (A) | AGC (S) | ATT (I) | AAA (K) | AAC (N) | CAA (Q) | CGA (R) | GAG (E) | TTA (L) | TCG (S) | CCG (P) | AAT (N) | AAT (N) | |
| DSY294 | TAC1-3 | Wild type | AAA (K) | TTT (F) | ATA (I) | ATG (M) | TCT (S) | AAT (N) | CAC (H) | GCT (A) | GCT (A) | AGC (S) | GTT (V) | AAA (K) | AAC (N) | GAA (E) | CGA (R) | GAG (E) | TCA (S) | TCG (S) | CTG (S) | AAT (N) | AAT (N) |
| TAC1-4 | Wild type | AAA (K) | TTT (F) | CTA (L) | GTG (V) | TTT (F) | AAT (N) | CAC (H) | GCT (A) | GTT (V) | AGC (S) | GTT (V) | AAA (K) | AAC (N) | CAA (Q) | CAA (Q) | GAG (E) | TCA (S) | TCG (S) | CTG (S) | AAT (N) | AAT (N) | |
| DSY296 | TAC1-5 | Hyperactive | AAA (K) | TTT (F) | CTA (L) | GTG (V) | TTT (F) | AAT (N) | CAC (H) | GCT (A) | GTT (V) | AGC (S) | GTT (V) | AAA (K) | AAC (N) | CAA (Q) | CAA (Q) | GAG (E) | TCA (S) | TCG (S) | CTG (S) | AAT (N) | GAT (D) |
| FH1 and FH2 | TAC1-6 | Wild type | AAA (K) | TTT (F) | ATA (I) | ATG (M) | TCT (S) | AAT (N) | CAC (H) | GCT (A) | GCT (A) | AGC (S) | GTT (V) | AAA (K) | AAC (N) | GAA (E) | CGA (R) | GGG (G) | TCA (S) | TTG (L) | CTG (S) | TAT (Y) | AAT (N) |
| TAC1-7 | Hyperactive | AAA (K) | TTT (F) | CTA (L) | ATG (M) | TTT (F) | AAT (N) | CAC (H) | GCT (A) | GCT (A) | AGC (S) | ATT (I) | AAT (N) | AAC (N) | GAA (E) | CGA (R) | GAG (E) | TCA (S) | TCG (S) | CCG (P) | AAT (N) | GAT (D) | |
| FH3 | TAC1-7 | Hyperactive | AAA (K) | TTT (F) | CTA (L) | ATG (M) | TTT (F) | AAT (N) | CAC (H) | GCT (A) | GCT (A) | AGC (S) | ATT (I) | AAT (N) | AAC (N) | GAA (E) | CGA (R) | GAG (E) | TCA (S) | TCG (S) | CCG (P) | AAT (N) | GAT (D) |
a
This allele is not corrected in CGD and contains a stop codon in the ORF.