TABLE 1.

Correlation coefficient for association of SSLP marker genotype and disease index score

		Correlation coefficienta
Chromosome	Marker	Allb	RFO1Col-0c	RFO1Ty-0d	Locus
1	F21M12	0.28	0.73	−0.13	RFO2
1	ciw12	0.26	0.60	−0.07
1	F15O4	0.18	0.38	−0.05
1	nga280	0.21	0.18	−0.02
1	nga111	0.49	−0.03	0.12
1	F3F9	0.72	—	—	RFO1
2	ciw2	0.06	−0.01	0.09
2	PLS7	0.19	0.16	0.17
2	C4H	0.21	0.24	0.19
2	BIO2	0.08	0.19	0.00
3	nga172	0.19	0.25	0.35
3	nga162	0.30	0.30	0.58	RFO3
3	ciw11	0.13	0.10	0.13
3	ciw4	0.03	0.08	−0.06
3	nga6	−0.12	−0.06	−0.28
4	ciw5	0.09	0.32	−0.11	RFO4
4	ciw6	0.09	0.17	0.00
4	ciw7	0.03	−0.07	−0.02
4	nga1107	0.05	−0.16	0.18
5	CTR1	0.13	0.19	0.08
5	ciw8	0.24	0.14	0.23	RFO5
5	PHYC	0.26	0.38	0.10
5	ciw9	0.16	0.35	−0.05	RFO6
5	MBK5	−0.06	0.05	−0.20

^aSignificant (P ≤ 0.05) correlation coefficient values are in italics. For significance, threshold values from genome-wide evaluation are derived from permutation of the BC population data (see materials and methods).

^bThreshold values at P = 0.05 and P = 0.01 are, respectively, 0.22 and 0.26 for the whole BC population.

^cThreshold values at P = 0.05 and P = 0.01 are, respectively, 0.30 and 0.36 for the RFO1^Col-0/RFO1^Ty-0 BC subpopulation.

^dThreshold values at P = 0.05 and P = 0.01 are, respectively, 0.31 and 0.37 for the RFO1^Ty-0/RFO1^Ty-0 BC subpopulation.